[Home] | [Total List]

[174133_at]

Description C57624_rc /REP_DB=TREMBL Accession /GB=C57624 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk306f5 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.9
(-3)
A 		3.3
(-0.7)
A 		4.7
(1.7)
A 		5.5
(3)
A 		4
B 2.5
(3)
A 		2.4
(1.8)
A 		2.1
(-1.8)
A 		2
(-3)
A 		1
C 1.7
(-3)
A 		2.4
(-2.8)
A 		2.1
(-2.9)
A 		19.7
(3)
A 		18
avr 2
(-3) 		2.7
(-2.4) 		3
(-2.2) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 4.9
(-2.6)
A 		2.5
(-2.9)
A 		1.9
(-2.9)
A 		1.2
(-3)
A 		4.9
(-2.6)
A 		55.7
(3)
A 		55
B 1.1
(-3)
A 		0.9
(-3)
A 		2.3
(-2.7)
A 		4.7
(-2.2)
A 		5.9
(-1.9)
A 		28.1
(3)
A 		27
C 2.4
(-2.9)
A 		1.5
(-3)
A 		19.4
(-0.3)
A 		16.2
(-0.8)
A 		8.9
(-1.9)
A 		40.7
(3)
A 		39
avr 2.8
(-2.8) 		1.6
(-3) 		7.9
(-2.1) 		7.4
(-2.1) 		6.6
(-2.2) 		41.5
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		1.2
(3)
A 		0.8
(-1.8)
A 		1
B 0.8
(3)
A 		0.6
(-0)
A 		0.5
(-1.5)
A 		0.4
(-3)
A 		0
C 0.6
(-3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		3.3
(3)
A 		3
avr 0.7
(-3) 		0.7
(-3) 		0.8
(-2.3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		0.3
(-3)
A 		1.5
(-2.5)
A 		13.6
(3)
A 		13
B 0.4
(-2.9)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		1.2
(-2.5)
A 		2.4
(-1.8)
A 		10.5
(3)
A 		10
C 0.9
(-2.8)
A 		0.5
(-3)
A 		4.9
(-1)
A 		3.3
(-1.7)
A 		2.9
(-1.9)
A 		13.6
(3)
A 		13
avr 0.7
(-3) 		0.6
(-3) 		2
(-2.3) 		1.6
(-2.5) 		2.3
(-2.2) 		12.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20440
Sequence Type Exemplar sequence
Representative Public ID C57624 NCBI
Target Description C57624_rc /REP_DB=TREMBL Accession /GB=C57624 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk306f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058368 NCBI Caenorhabditis elegans Y18H1A.1 (Y18H1A.1) mRNA, complete cds. 11/11 None
SNAP00000022328 ENSEMBL cdna:SNAP chromosome:CEL140:I:678282:691259:1 11/11 None
GENEFINDER00000022380 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:687814:691259:1 11/11 None
Y18H1A.1 ENSEMBL cdna:known chromosome:CEL140:I:688282:691270:1 gene:Y18H1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:690927-691260(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.1
Entrez Gene 171660 Entrez gene
SwissProt Q9BL95 EMBL-EBI
WormBase CE26957 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490769 Y18H1A.1 [Caenorhabditis elegans] gb|AAK21505.1| Hypothetical protein Y18H1A.1 [Caenorhabditis elegans] 0.0
blast CAB16508 Hypothetical protein Y57G11C.6 [Caenorhabditis elegans] ref|NP_502779.1| Y57G11C.6 [Caenorhabditis elegans] 0.0
blast AAB88314 Hypothetical protein C24D10.1 [Caenorhabditis elegans] ref|NP_500733.2| C24D10.1 [Caenorhabditis elegans] 0.0
blast AAB88314 Hypothetical protein C24D10.1 [Caenorhabditis elegans] ref|NP_500733.2| C24D10.1 [Caenorhabditis elegans] 1.0E-179
blast NP_490769 Y18H1A.1 [Caenorhabditis elegans] gb|AAK21505.1| Hypothetical protein Y18H1A.1 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-23
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.3E-29
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-23
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.0E-8
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-23
Sequence
Target Sequence 
>C. ELEGANS:174133_AT
aaagcttgccgaaccatgtattgcggatattgtcaaatcgattcgctcccagagaccaag
agccgtggattcattttgtcagtactgctccctgtacatttcgttgctctacttcatcaa
gaagaaagtgacaaaaccagcagaaggggataaaaagccaacactgagcaacaaatacat
ctacaagaagtcggttgagttgaccaagcaattcaccgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTTGCCGAACCATGTATTGCG 83 125 28 Antisense
GAACCATGTATTGCGGATATTGTCA 589 345 38 Antisense
CAGAGACCAAGAGCCGTGGATTCAT 331 205 77 Antisense
GTGGATTCATTTTGTCAGTACTGCT 362 489 92 Antisense
TTCATTTTGTCAGTACTGCTCCCTG 111 689 97 Antisense
GCAGAAGGGGATAAAAAGCCAACAC 483 309 167 Antisense
AAAGCCAACACTGAGCAACAAATAC 370 125 181 Antisense
AACACTGAGCAACAAATACATCTAC 9 137 187 Antisense
AAATACATCTACAAGAAGTCGGTTG 396 73 200 Antisense
GTCGGTTGAGTTGACCAAGCAATTC 241 473 217 Antisense
AGTTGACCAAGCAATTCACCGTTCT 321 65 225 Antisense
Sequence Source Affymetrix Proprietary Database