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[174132_at]

Description C31215_rc /REP_DB=TREMBL Accession /GB=C31215 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273d8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      6grp_total > 29      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 82.6
(-3)
A 		112.8
(-2)
A 		85.2
(-2.9)
P 		259.7
(3)
P 		177
B 126.2
(-1.4)
P 		146.6
(-0.4)
A 		93.2
(-3)
A 		214.7
(3)
P 		122
C 81.3
(-3)
A 		119.5
(-1.5)
A 		140.5
(-0.6)
P 		232
(3)
P 		151
avr 96.7
(-3) 		126.3
(-1.7) 		106.3
(-2.6) 		235.5
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 176.5
(3)
A 		79.5
(-2.8)
P 		80.5
(-2.8)
P 		114.4
(-0.7)
P 		166
(2.4)
P 		76.6
(-3)
P 		100
B 242.2
(3)
P 		192.1
(1.2)
P 		71.5
(-3)
P 		91.8
(-2.3)
P 		189.7
(1.2)
P 		151
(-0.2)
P 		171
C 207.3
(3)
P 		163.4
(1.2)
P 		73.2
(-2.6)
P 		102
(-1.4)
P 		107.5
(-1.2)
P 		63.9
(-3)
P 		143
avr 208.7
(3) 		145
(0.1) 		75.1
(-3) 		102.7
(-1.8) 		154.4
(0.6) 		97.2
(-2) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.1
(-0)
A 		24.5
(-2.2)
A 		22.3
(-3)
P 		38
(3)
P 		16
B 40.2
(1.6)
P 		36.2
(0.6)
A 		21.6
(-3)
A 		45.7
(3)
P 		24
C 26.9
(-3)
A 		34.3
(-1)
A 		49
(3)
P 		39.1
(0.3)
P 		22
avr 32.4
(-2.2) 		31.7
(-2.6) 		31
(-3) 		40.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 32.5
(-0.2)
A 		28.3
(-1)
P 		17.5
(-3)
P 		29
(-0.9)
P 		50.1
(3)
P 		18.6
(-2.8)
P 		33
B 84.3
(3)
P 		64
(1.2)
P 		17.4
(-3)
P 		24.3
(-2.4)
P 		77.1
(2.4)
P 		56.3
(0.5)
P 		67
C 76.8
(3)
P 		49.8
(0.2)
P 		18.6
(-3)
P 		20.5
(-2.8)
P 		34.8
(-1.3)
P 		21.4
(-2.7)
P 		58
avr 64.5
(3) 		47.4
(0.8) 		17.8
(-3) 		24.6
(-2.1) 		54
(1.7) 		32.1
(-1.2) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20883
Sequence Type Exemplar sequence
Representative Public ID C31215 NCBI
Target Description C31215_rc /REP_DB=TREMBL Accession /GB=C31215 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk273d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C38H2.2 ENSEMBL cdna:known chromosome:CEL140:III:10381658:10385251:1 gene:C38H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10384846-10385139(+) 100.0 100.0
Public Domain and Genome References
Ensembl C38H2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84707 Hypothetical protein C38H2.2 [Caenorhabditis elegans] ref|NP_499293.2| C38H2.2 [Caenorhabditis elegans] gb|AAG36940.1| core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase [Caenorhabditis elegans] 0.0
blast CAE71479 Hypothetical protein CBG18398 [Caenorhabditis briggsae] 0.0
blast XP_392784 PREDICTED: similar to CG9520-PB, isoform B [Apis mellifera] ref|XP_623149.1| PREDICTED: similar to CG9520-PB, isoform B [Apis mellifera] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C38H2.2 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:174132_AT
tctttctcaagtcatttgaattacggtagacattgcgcgtcaaatctgatgtattggaaa
taattttcgatgtttatcaattgatcaatatatttgaaagccgtcctgtctaccaaggtt
cgactcccaaagtgtttagtgaattgttttttggatattttagtttaaaatttctgctta
cgggaatcatcagagttttacatgtaaatgtggtttttttaattcaatttgaaagacgat
cggccgatcacaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCTCAAGTCATTTGAATTACG 49 615 13 Antisense
ACGGTAGACATTGCGCGTCAAATCT 173 93 35 Antisense
TGCGCGTCAAATCTGATGTATTGGA 527 581 46 Antisense
TAATTTTCGATGTTTATCAATTGAT 221 635 73 Antisense
GATCAATATATTTGAAAGCCGTCCT 144 421 95 Antisense
CTACCAAGGTTCGACTCCCAAAGTG 319 195 122 Antisense
GGTTCGACTCCCAAAGTGTTTAGTG 505 395 129 Antisense
GTGTTTAGTGAATTGTTTTTTGGAT 157 485 144 Antisense
AAAATTTCTGCTTACGGGAATCATC 222 127 179 Antisense
TACGGGAATCATCAGAGTTTTACAT 160 649 191 Antisense
GAAAGACGATCGGCCGATCACACCC 374 359 243 Antisense
Sequence Source Affymetrix Proprietary Database