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[174131_s_at]

Description C32090_rc /REP_DB=TREMBL Accession /GB=C32090 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk314e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 87      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 82
(-2.6)
P 		80.1
(-2.7)
P 		66.8
(-3)
P 		318.6
(3)
P 		252
B 83.9
(-3)
P 		104.1
(-2.2)
P 		84.1
(-3)
P 		237.4
(3)
P 		154
C 52.6
(-3)
P 		76.7
(-2.4)
P 		71.8
(-2.5)
P 		286.6
(3)
P 		234
avr 72.8
(-3) 		87
(-2.6) 		74.2
(-3) 		280.9
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 88
(-2.9)
P 		82.7
(-3)
P 		188.1
(-0)
P 		193
(0.1)
P 		157.7
(-0.9)
P 		296.8
(3)
P 		214
B 77.7
(-3)
P 		87.5
(-2.8)
P 		128.3
(-2.1)
P 		98.4
(-2.6)
P 		225.4
(-0.5)
P 		430.4
(3)
P 		353
C 77.7
(-3)
P 		104.1
(-2.5)
P 		106.9
(-2.4)
P 		163.4
(-1.2)
P 		246
(0.5)
P 		367.8
(3)
P 		290
avr 81.1
(-3) 		91.4
(-2.8) 		141.1
(-1.7) 		151.6
(-1.5) 		209.7
(-0.3) 		365
(3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 29.8
(-0.5)
P 		17.4
(-3)
P 		17.5
(-3)
P 		46.6
(3)
P 		29
B 26.8
(-1.6)
P 		25.7
(-1.8)
P 		19.5
(-3)
P 		50.6
(3)
P 		31
C 17.4
(-3)
P 		22.1
(-2.1)
P 		25
(-1.5)
P 		48.3
(3)
P 		31
avr 24.7
(-2.1) 		21.7
(-2.8) 		20.7
(-3) 		48.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 16.2
(-3)
P 		29.4
(-1.6)
P 		41
(-0.3)
P 		49
(0.5)
P 		47.6
(0.4)
P 		72.3
(3)
P 		56
B 27
(-3)
P 		29.1
(-2.9)
P 		31.2
(-2.8)
P 		26.1
(-3)
P 		91.6
(-0.1)
P 		160.5
(3)
P 		134
C 28.8
(-2.9)
P 		31.8
(-2.7)
P 		27.2
(-3)
P 		32.9
(-2.6)
P 		79.6
(0.3)
P 		123.1
(3)
P 		96
avr 24
(-3) 		30.1
(-2.6) 		33.1
(-2.4) 		36
(-2.2) 		72.9
(0.1) 		118.6
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174131_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21037
Sequence Type Exemplar sequence
Representative Public ID C32090 NCBI
Target Description C32090_rc /REP_DB=TREMBL Accession /GB=C32090 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk314e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066496 NCBI Caenorhabditis elegans C13G5.2 (C13G5.2) mRNA, complete cds. 11/11 A 
SNAP00000030083 ENSEMBL cdna:SNAP chromosome:CEL140:III:8616771:8618341:-1 11/11 None
GENEFINDER00000030088 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8616771:8618341:-1 11/11 None
C13G5.2 ENSEMBL cdna:known chromosome:CEL140:III:8616747:8618342:-1 gene:C13G5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8616751-8617110(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13G5.2
Entrez Gene 176208 Entrez gene
SwissProt P34327 EMBL-EBI
WormBase CE29086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37563 Hypothetical protein C13G5.2 [Caenorhabditis elegans] ref|NP_498897.1| C13G5.2 [Caenorhabditis elegans] sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III 1.0E-147
blast AAK68682 Hypothetical protein C03B1.14 [Caenorhabditis elegans] ref|NP_509067.1| C03B1.14 [Caenorhabditis elegans] 8.0E-57
blast CAE69278 Hypothetical protein CBG15332 [Caenorhabditis briggsae] 7.0E-36
Sequence
Target Sequence 
>C. ELEGANS:174131_S_AT
ttaggaacgattttcggggctgtcgtcggaggaattgttggtggacattttggtggtcac
tacagtcacgtggcaacagaaaatgcgttgaatcatgttaaatgggacgttgtaacgttc
gtttgtgatggatgtgatgaagaatacacatggaaaaagtatcaagagattgaaggaacc
tgttgtacaagattcaacaacaagaggcaggattccgtggattattggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGGAACGATTTTCGGGGCTGTCG 356 1 24 Antisense
TCGGGGCTGTCGTCGGAGGAATTGT 635 401 37 Antisense
TGTCGTCGGAGGAATTGTTGGTGGA 647 555 44 Antisense
TGGTGGACATTTTGGTGGTCACTAC 464 553 62 Antisense
TGGTGGTCACTACAGTCACGTGGCA 284 553 74 Antisense
GTCACTACAGTCACGTGGCAACAGA 498 465 79 Antisense
GTCACGTGGCAACAGAAAATGCGTT 223 465 88 Antisense
GAAAATGCGTTGAATCATGTTAAAT 583 343 102 Antisense
GAATCATGTTAAATGGGACGTTGTA 502 327 113 Antisense
ACAACAAGAGGCAGGATTCCGTGGA 611 111 220 Antisense
GCAGGATTCCGTGGATTATTGGTTC 161 311 230 Antisense
Sequence Source Affymetrix Proprietary Database