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[174130_at]

Description C54221_rc /REP_DB=TREMBL Accession /GB=C54221 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_high_8_8 > 59      6grp_highest_nonorm > 90      6grp_total > 96      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 130.2
(0.5)
P 		103.9
(-1.3)
P 		167.7
(3)
P 		79.1
(-3)
A 		89
B 145.2
(2.1)
P 		154.6
(3)
P 		122.7
(-0)
P 		91.5
(-3)
P 		63
C 133
(-1.4)
P 		127.5
(-3)
P 		148.4
(3)
P 		129.7
(-2.4)
P 		21
avr 136.1
(1.7) 		128.7
(0.7) 		146.3
(3) 		100.1
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 153
(-0.5)
P 		129.8
(-2)
P 		130.7
(-2)
P 		115.2
(-3)
P 		206.7
(3)
P 		204.6
(2.9)
P 		92
B 93.5
(-3)
P 		107.3
(-2.5)
P 		127.6
(-1.8)
P 		180.4
(0.2)
P 		183
(0.3)
P 		258.1
(3)
P 		165
C 171.8
(0.4)
P 		129
(-3)
P 		205.2
(3)
P 		198.2
(2.4)
P 		191
(1.9)
P 		154
(-1)
P 		76
avr 139.4
(-1.8) 		122
(-3) 		154.5
(-0.7) 		164.6
(0.1) 		193.6
(2.1) 		205.6
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 47.4
(3)
P 		22.6
(-1.2)
P 		43.8
(2.4)
P 		11.6
(-3)
A 		36
B 46.3
(3)
P 		38.2
(1.2)
P 		28.4
(-1)
P 		19.5
(-3)
P 		27
C 44
(1.4)
P 		36.7
(-0)
P 		51.7
(3)
P 		21.9
(-3)
P 		30
avr 45.9
(3) 		32.5
(0.1) 		41.3
(2) 		17.7
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 28.2
(-3)
P 		46.2
(0.2)
P 		28.5
(-2.9)
P 		29.2
(-2.8)
P 		62.4
(3)
P 		49.8
(0.8)
P 		34
B 32.5
(-2.9)
P 		35.7
(-2.6)
P 		31
(-3)
P 		47.8
(-1.5)
P 		74.3
(1)
P 		96.3
(3)
P 		65
C 63.7
(3)
P 		39.4
(-3)
P 		52.2
(0.2)
P 		39.9
(-2.9)
P 		61.8
(2.5)
P 		51.5
(-0)
P 		24
avr 41.5
(-2.1) 		40.4
(-2.3) 		37.2
(-3) 		39
(-2.6) 		66.2
(3) 		65.9
(2.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21154
Sequence Type Exemplar sequence
Representative Public ID C54221 NCBI
Target Description C54221_rc /REP_DB=TREMBL Accession /GB=C54221 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065698 NCBI Caenorhabditis elegans K10D2.3 (K10D2.3) mRNA, complete cds. 11/11 None
K10D2.3 ENSEMBL cdna:known chromosome:CEL140:III:5173902:5180462:1 gene:K10D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5180092-5180373(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.3
Entrez Gene 175707 Entrez gene
SwissProt Q09409 EMBL-EBI
WormBase CE02015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602503_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE:1597451_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.2227.1.A1_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.6673.1.A1_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.6673.1.A1_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CHICKEN:GGA.17600.1.S1_S_AT zinc finger, CCHC domain containing 11 gga
HG-U133_PLUS_2:217594_AT zinc finger, CCHC domain containing 11 hs
HG-U133A_2:217594_AT zinc finger, CCHC domain containing 11 hs
HG-U133A:217594_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBA:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBB:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBC:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBD:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HUGENEFL:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HC-G110:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBC:RC_R60512_S_AT zinc finger, CCHC domain containing 11 hs
HUGENEFL:D83776_AT zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.217305.0.A1_3P_AT zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.12413.0.S1_3P_AT zinc finger, CCHC domain containing 11 hs
HG-U133A_2:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U133_PLUS_2:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U133A:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U95AV2:41669_AT zinc finger, CCHC domain containing 11 hs
HG-U133_PLUS_2:230713_AT Zinc finger, CCHC domain containing 11 hs
HG-U133B:230713_AT Zinc finger, CCHC domain containing 11 hs
HG-U95B:59814_AT Zinc finger, CCHC domain containing 11 hs
HU35KSUBC:RC_N67572_AT Zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.182185.0.A1_3P_AT Zinc finger, CCHC domain containing 11 hs
MOUSE430_2:1439631_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1439631_AT zinc finger, CCHC domain containing 11 mm
MG-U74BV2:110017_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1437395_AT zinc finger, CCHC domain containing 11 mm
MOUSE430_2:1437395_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1456553_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOUSE430_2:1456553_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOE430B:1456668_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOUSE430_2:1456668_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBA:TC25178_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBA:TC25178_G_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBB:TC31240_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBC:TC41062_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
RG-U34C:RC_AI228818_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAE230B:1390820_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAT230_2:1390820_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAE230B:1397858_AT Zinc finger, CCHC domain containing 11 (predicted) rn
RAT230_2:1397858_AT Zinc finger, CCHC domain containing 11 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62541 Hypothetical protein K10D2.3 [Caenorhabditis elegans] ref|NP_498099.1| K10D2.3 [Caenorhabditis elegans] 0.0
blast CAE73782 Hypothetical protein CBG21327 [Caenorhabditis briggsae] 0.0
blast CAE57164 Hypothetical protein CBG25098 [Caenorhabditis briggsae] 5.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 5.7E-17
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 3.2E-24
Sequence
Target Sequence 
>C. ELEGANS:174130_AT
gaatattctagttctatttccccattcccccactataatcatctttataatttttttctt
gctttcatcgttcccctagttaatcatttatcatgtgccttccagcgttcttccctactc
ccaaaatgttttaggatccgtgtttttttttgtttttcttttttcaaattctctgaatta
taatttaaaaagaatcttcctaaatctaggaatcacatttgagttgttgtactttttctg
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATTCTAGTTCTATTTCCCCAT 694 325 22 Antisense
ATATTCTAGTTCTATTTCCCCATTC 331 19 24 Antisense
ATTCCCCCACTATAATCATCTTTAT 318 7 45 Antisense
TTATAATTTTTTTCTTGCTTTCATC 380 679 66 Antisense
TAATTTTTTTCTTGCTTTCATCGTT 191 635 69 Antisense
ATCGTTCCCCTAGTTAATCATTTAT 272 35 88 Antisense
AATCATTTATCATGTGCCTTCCAGC 209 171 103 Antisense
TACTCCCAAAATGTTTTAGGATCCG 581 95 137 Antisense
TAAAAAGAATCTTCCTAAATCTAGG 470 639 207 Antisense
GGAATCACATTTGAGTTGTTGTACT 286 533 230 Antisense
TTTGAGTTGTTGTACTTTTTCTGTT 70 669 239 Antisense
Sequence Source Affymetrix Proprietary Database