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[174129_at]

Description C32807_rc /REP_DB=TREMBL Accession /GB=C32807 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 53      4grp_high_8_8 > 18      6grp_highest_nonorm > 86      6grp_total > 48      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 502
1 2 3 4 range
A 1111.7
(3)
P 		768.2
(-3)
P 		823.4
(-2)
P 		1028.7
(1.6)
P 		344
B 1188.7
(3)
P 		851.3
(-1.3)
P 		718.6
(-3)
P 		1053.2
(1.3)
P 		470
C 1109.5
(3)
P 		871.3
(-0.4)
P 		686.6
(-3)
P 		992
(1.3)
P 		423
avr 1136.6
(3) 		830.3
(-1.7) 		742.9
(-3) 		1024.6
(1.3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 1163.1
(3)
P 		891.5
(0.2)
P 		586.4
(-3)
P 		766.6
(-1.1)
P 		1115
(2.5)
P 		973.6
(1)
P 		577
B 1162.6
(2.6)
P 		1120.5
(1.7)
P 		1009.6
(-0.5)
P 		1060.3
(0.5)
P 		882.1
(-3)
P 		1184.7
(3)
P 		303
C 768.1
(-3)
P 		997.5
(-0.3)
P 		833.4
(-2.2)
P 		1063.3
(0.5)
P 		819.1
(-2.4)
P 		1273.2
(3)
P 		505
avr 1031.3
(1) 		1003.2
(0.5) 		809.8
(-3) 		963.4
(-0.2) 		938.7
(-0.7) 		1143.8
(3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 404.8
(3)
P 		166.8
(-2.6)
P 		215.3
(-1.5)
P 		150.6
(-3)
P 		254
B 379.1
(3)
P 		210.2
(-1.8)
P 		166.5
(-3)
P 		224.4
(-1.4)
P 		213
C 367.3
(3)
P 		250.5
(-0.5)
P 		239.3
(-0.8)
P 		167.3
(-3)
P 		200
avr 383.7
(3) 		209.2
(-2.2) 		207
(-2.2) 		180.8
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 214.4
(-0.5)
P 		317.1
(2.4)
P 		127.7
(-3)
P 		194.4
(-1.1)
P 		336.5
(3)
P 		237
(0.1)
P 		209
B 404.5
(1.9)
P 		373
(0.9)
P 		245.2
(-3)
P 		280.8
(-1.9)
P 		358.4
(0.5)
P 		441.8
(3)
P 		197
C 284.7
(-1)
P 		304.4
(-0.4)
P 		212.1
(-3)
P 		213.8
(-3)
P 		265
(-1.5)
P 		426.2
(3)
P 		214
avr 301.2
(0.7) 		331.5
(1.7) 		195
(-3) 		229.7
(-1.8) 		320
(1.3) 		368.3
(3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20232
Sequence Type Exemplar sequence
Representative Public ID C32807 NCBI
Target Description C32807_rc /REP_DB=TREMBL Accession /GB=C32807 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059746 NCBI Caenorhabditis elegans F27D4.2 (F27D4.2) mRNA, complete cds. 11/11 None
F27D4.2.2 ENSEMBL cdna:known chromosome:CEL140:I:7712699:7715176:-1 gene:F27D4.2 11/11 None
F27D4.2.3 ENSEMBL cdna:known chromosome:CEL140:I:7712699:7715176:-1 gene:F27D4.2 11/11 None
F27D4.2.4 ENSEMBL cdna:known chromosome:CEL140:I:7712699:7715183:-1 gene:F27D4.2 11/11 None
F27D4.2.1 ENSEMBL cdna:known chromosome:CEL140:I:7712699:7715183:-1 gene:F27D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7712681-7712992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27D4.2
Entrez Gene 172536 Entrez gene
SwissProt Q93616 EMBL-EBI
WormBase CE36140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01968 Hypothetical protein F27D4.2 [Caenorhabditis elegans] ref|NP_492147.2| F27D4.2 [Caenorhabditis elegans] 1.0E-47
blast CAE57356 Hypothetical protein CBG00300 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:174129_AT
agcccatcagtttcatcatttttattcttcaaaaatttgagaaatctttcagtttcttgt
tccccccaatcctccccattcgcttttttttgcatcccgcagcgggtatctcgttttgat
taatagaagagtaatttcccaatcacaaaaccatcaccaggaatgtttcaaattttccag
tatttatctatcaattcgtcacctcacttgtctcgcattttctcgttgtttccgtgcttc
ttgtgaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCCATCAGTTTCATCATTTTTAT 270 83 29 Antisense
ATCAGTTTCATCATTTTTATTCTTC 590 29 34 Antisense
TTTTTTTGCATCCCGCAGCGGGTAT 528 675 113 Antisense
CATCCCGCAGCGGGTATCTCGTTTT 403 211 121 Antisense
GCAGCGGGTATCTCGTTTTGATTAA 543 313 127 Antisense
AGAAGAGTAATTTCCCAATCACAAA 564 71 153 Antisense
CCCAATCACAAAACCATCACCAGGA 595 255 166 Antisense
AACCATCACCAGGAATGTTTCAAAT 364 147 177 Antisense
TTTTCCAGTATTTATCTATCAATTC 461 677 201 Antisense
ATTTATCTATCAATTCGTCACCTCA 353 15 210 Antisense
TTGTTTCCGTGCTTCTTGTGAATAT 578 703 254 Antisense
Sequence Source Affymetrix Proprietary Database