[Home] | [Total List]

[174127_at]

Description C33555_rc /REP_DB=TREMBL Accession /GB=C33555 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk372b2 : 3prime end, single read.
Cluster 6grp_total > 60      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 29.5
(-0.8)
A 		29
(-1)
A 		20
(-3)
A 		46.4
(3)
A 		26
B 4
(-2.8)
A 		22.7
(0.8)
A 		2.9
(-3)
A 		34.5
(3)
A 		32
C 37.2
(1.5)
A 		5.1
(-3)
A 		45.9
(2.7)
A 		47.9
(3)
A 		43
avr 23.6
(-1.8) 		18.9
(-3) 		22.9
(-2) 		42.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 29.7
(0.4)
A 		3.7
(-3)
A 		49.4
(3)
A 		34.7
(1.1)
A 		21.9
(-0.6)
A 		24.6
(-0.3)
A 		46
B 28.7
(-1.2)
A 		26.9
(-1.4)
A 		51.2
(2.1)
A 		57.2
(3)
A 		16
(-3)
A 		27.7
(-1.3)
A 		41
C 14.4
(-0.4)
A 		12.3
(-0.9)
A 		5.5
(-2.8)
A 		26.7
(3)
A 		4.8
(-3)
A 		17.8
(0.6)
A 		22
avr 24.3
(-0.6) 		14.3
(-3) 		35.4
(2) 		39.5
(3) 		14.2
(-3) 		23.4
(-0.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.7
(3)
A 		6.3
(-1.8)
A 		5.2
(-3)
A 		6.8
(-1.3)
A 		6
B 1.3
(-2.5)
A 		5.6
(1.4)
A 		0.7
(-3)
A 		7.4
(3)
A 		7
C 12.3
(1.5)
A 		1.5
(-3)
A 		16
(3)
A 		8.1
(-0.3)
A 		15
avr 8.1
(3) 		4.5
(-3) 		7.3
(1.7) 		7.4
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.5
(-0.3)
A 		1.3
(-3)
A 		10.8
(3)
A 		8.8
(1.7)
A 		6.6
(0.3)
A 		6
(-0)
A 		10
B 10
(-0.6)
A 		8.9
(-1.3)
A 		12.4
(1.1)
A 		15.1
(3)
A 		6.5
(-3)
A 		10.3
(-0.3)
A 		9
C 5.3
(2.1)
A 		3.8
(0.1)
A 		1.4
(-3)
A 		5.4
(2.2)
A 		1.5
(-2.9)
A 		6
(3)
A 		5
avr 6.9
(-0.4) 		4.7
(-3) 		8.2
(1.1) 		9.8
(3) 		4.9
(-2.8) 		7.4
(0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20454
Sequence Type Exemplar sequence
Representative Public ID C33555 NCBI
Target Description C33555_rc /REP_DB=TREMBL Accession /GB=C33555 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk372b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y18H1A.10 ENSEMBL cdna:known chromosome:CEL140:I:682879:686578:-1 gene:Y18H1A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182093 10/11 Negative Strand Matching Probes A 
SNAP00000022328 9/11 Negative Strand Matching Probes None
GENEFINDER00000022382 9/11 Negative Strand Matching Probes None
Y18H1A.11 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:682888-683167(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y18H1A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490768 Y18H1A.10 [Caenorhabditis elegans] gb|AAK21513.2| Hypothetical protein Y18H1A.10 [Caenorhabditis elegans] 0.0
blast CAA95786 Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAA95847.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAB10931.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] ref|NP_492043.1| C01H6.9 [Caenorhabditis elegans] 1.0E-157
blast CAE58677 Hypothetical protein CBG01851 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.3E-6
Pfam IPR000719 EMBL-EBI Protein kinase 0.014
Sequence
Target Sequence 
>C. ELEGANS:174127_AT
ctcactgtaaaaaagccaacgttcaaatcggtggccgaatatcctctctgcaaatttctt
ctgacatacgtgtcgtagtcgcggataattcgacaaatcgaatcgctcgtcgatattcct
tcggttctctgcgtctccaggaacatgccagcagtgcggtgcttctcgtagatgtcttct
ccggcgggaccttggtatggcagagcgtcgtgtgacataaagtcaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCACTGTAAAAAAGCCAACGTTCA 424 227 19 Antisense
CCAACGTTCAAATCGGTGGCCGAAT 30 1 34 Antisense
AAATCGGTGGCCGAATATCCTCTCT 620 115 43 Antisense
ATATCCTCTCTGCAAATTTCTTCTG 432 21 57 Antisense
GCAAATTTCTTCTGACATACGTGTC 183 317 68 Antisense
TACGTGTCGTAGTCGCGGATAATTC 460 643 85 Antisense
CGAATCGCTCGTCGATATTCCTTCG 236 253 117 Antisense
AACATGCCAGCAGTGCGGTGCTTCT 121 137 160 Antisense
GCGGGACCTTGGTATGGCAGAGCGT 649 291 202 Antisense
GGTATGGCAGAGCGTCGTGTGACAT 542 505 212 Antisense
GCGTCGTGTGACATAAAGTCAACCT 623 289 223 Antisense
Sequence Source Affymetrix Proprietary Database