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[174126_at]

Description C52573_rc /REP_DB=TREMBL Accession /GB=C52573 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk260f6 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 7.5
(-3)
A 		71.2
(1.4)
A 		60.5
(0.7)
A 		93.8
(3)
A 		86
B 36.4
(-1.9)
A 		20.5
(-3)
A 		35.3
(-1.9)
A 		104.3
(3)
A 		84
C 46.5
(-2.8)
A 		43.5
(-3)
A 		46.1
(-2.8)
A 		126.9
(3)
P 		83
avr 30.1
(-3) 		45.1
(-1.8) 		47.3
(-1.7) 		108.3
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 595
1 2 3 4 5 6 range
A 81.8
(-2.1)
A 		9
(-3)
A 		37.6
(-2.6)
A 		123.3
(-1.6)
M 		358.4
(1.3)
P 		496.6
(3)
P 		488
B 30.6
(-2.9)
A 		44.4
(-2.8)
A 		20.1
(-3)
A 		137.4
(-1.8)
P 		336
(0.2)
P 		603.8
(3)
P 		584
C 66.7
(-2.8)
A 		46.9
(-3)
A 		64.9
(-2.8)
A 		125.8
(-2.1)
P 		246
(-0.7)
P 		561.1
(3)
P 		514
avr 59.7
(-2.7) 		33.4
(-3) 		40.9
(-2.9) 		128.8
(-1.9) 		313.5
(0.2) 		553.8
(3) 		520
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.7
(-3)
A 		15.5
(2.9)
A 		15.8
(3)
A 		13.7
(2)
A 		13
B 11.6
(-0.7)
A 		5.1
(-3)
A 		8.2
(-1.9)
A 		22.2
(3)
A 		17
C 15.4
(-1)
A 		12.5
(-3)
A 		16.1
(-0.6)
A 		21.4
(3)
P 		9
avr 9.9
(-3) 		11
(-2.3) 		13.4
(-0.7) 		19.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 15.1
(-2.4)
A 		3.2
(-3)
A 		8.2
(-2.7)
A 		31.3
(-1.6)
M 		108.2
(2.4)
P 		120.9
(3)
P 		118
B 10.7
(-2.8)
A 		14.8
(-2.7)
A 		4.9
(-3)
A 		36.4
(-2.1)
P 		136.5
(0.6)
P 		225.1
(3)
P 		220
C 24.7
(-2.6)
A 		14.3
(-3)
A 		16.5
(-2.9)
A 		25.3
(-2.6)
P 		79.6
(-0.7)
P 		187.8
(3)
P 		174
avr 16.8
(-2.8) 		10.8
(-3) 		9.9
(-3) 		31
(-2.2) 		108.1
(0.5) 		177.9
(3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21146
Sequence Type Exemplar sequence
Representative Public ID C52573 NCBI
Target Description C52573_rc /REP_DB=TREMBL Accession /GB=C52573 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk260f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C40H1.1 ENSEMBL cdna:known chromosome:CEL140:III:9322234:9324743:1 gene:C40H1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9324445-9324729(+) 100.0 100.0
Public Domain and Genome References
Ensembl C40H1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79552 Hypothetical protein C40H1.1 [Caenorhabditis elegans] ref|NP_499051.1| CPEB polyA binding family member (cpb-1) [Caenorhabditis elegans] sp|Q03571|CPB1_CAEEL Cytoplasmic polyadenylation element binding protein 0.0
blast AAT72429 CPB-1 [Caenorhabditis japonica] gb|AAT72412.1| CPB-1 [Caenorhabditis japonica] sp|Q6E3C7|CPB1_CAEJA Cytoplasmic polyadenylation element binding protein 1.0E-140
blast AAT72427 CPB-1 [Caenorhabditis remanei] gb|AAT72410.1| CPB-1 [Caenorhabditis remanei] sp|Q6E3C9|CPB1_CAERE Cytoplasmic polyadenylation element binding protein 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:174126_AT
catttcccccaacatgtttctatattattatcaatccctggtaccctatatcttgtgtat
ttatgtacatcccattcttagcctatccgaattggcagaattttgtaatttcctttagaa
ttttttatttattgcccgtatcccacaaagttcatactcgatcagagatatagcttagat
agtttgaattgtagctatcattcagattaattatattatttattgtcaccccgtgatatt
tagtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCCCCCAACATGTTTCTATAT 20 215 17 Antisense
TATTATTATCAATCCCTGGTACCCT 662 661 39 Antisense
CCCTGGTACCCTATATCTTGTGTAT 500 257 52 Antisense
TATGTACATCCCATTCTTAGCCTAT 553 655 78 Antisense
ATTCTTAGCCTATCCGAATTGGCAG 543 1 90 Antisense
GGCAGAATTTTGTAATTTCCTTTAG 394 533 110 Antisense
TTTATTTATTGCCCGTATCCCACAA 475 673 140 Antisense
TATCCCACAAAGTTCATACTCGATC 232 657 155 Antisense
GAATTGTAGCTATCATTCAGATTAA 545 323 202 Antisense
ATATTATTTATTGTCACCCCGTGAT 215 19 229 Antisense
TTGTCACCCCGTGATATTTAGTCCC 642 647 239 Antisense
Sequence Source Affymetrix Proprietary Database