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[174124_at]

Description C33037_rc /REP_DB=TREMBL Accession /GB=C33037 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 86      6grp_total > 47      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 873
1 2 3 4 range
A 1319
(3)
P 		446.3
(-3)
P 		955.2
(0.5)
P 		752.4
(-0.9)
P 		873
B 794
(-1.1)
P 		896.8
(-0.3)
P 		553.5
(-3)
P 		1308.4
(3)
P 		755
C 1102.5
(2.5)
P 		1000.5
(1.4)
P 		1145.6
(3)
P 		603.4
(-3)
P 		542
avr 1071.8
(3) 		781.2
(-3) 		884.8
(-0.9) 		888.1
(-0.8) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 928
1 2 3 4 5 6 range
A 551.3
(-3)
P 		976.1
(0.3)
P 		655.6
(-2.2)
P 		571.2
(-2.8)
P 		933.7
(-0.1)
P 		1335.3
(3)
P 		784
B 1408.8
(3)
P 		1224.9
(1.4)
P 		1190.5
(1.1)
P 		746
(-2.8)
P 		729
(-3)
P 		1254.2
(1.6)
P 		680
C 1277.2
(1.6)
P 		1197.8
(1)
P 		929
(-0.9)
P 		628.8
(-3)
P 		927.5
(-0.9)
P 		1478.8
(3)
P 		850
avr 1079.1
(0.7) 		1132.9
(1.1) 		925
(-0.7) 		648.7
(-3) 		863.4
(-1.2) 		1356.1
(3) 		707
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 480.2
(3)
P 		96.9
(-3)
P 		249.7
(-0.6)
P 		110.1
(-2.8)
P 		383
B 253.2
(2)
P 		221.5
(0.7)
P 		128.2
(-3)
P 		278.8
(3)
P 		151
C 365
(2.3)
P 		287.7
(0.8)
P 		399.3
(3)
P 		101.7
(-3)
P 		298
avr 366.1
(3) 		202
(-1.9) 		259.1
(-0.2) 		163.5
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 101.6
(-3)
P 		347.1
(3)
P 		142.8
(-2)
P 		144.9
(-1.9)
P 		281.8
(1.4)
P 		325.1
(2.5)
P 		246
B 490.2
(3)
P 		407.7
(1.3)
P 		289.1
(-1.1)
P 		197.6
(-3)
P 		296.2
(-1)
P 		467.7
(2.5)
P 		293
C 473.4
(2.6)
P 		365.5
(0.9)
P 		236.4
(-1.2)
P 		126.5
(-3)
P 		300.1
(-0.2)
P 		495
(3)
P 		369
avr 355.1
(1.4) 		373.4
(1.8) 		222.8
(-1.5) 		156.3
(-3) 		292.7
(-0) 		429.3
(3) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20152
Sequence Type Exemplar sequence
Representative Public ID C33037 NCBI
Target Description C33037_rc /REP_DB=TREMBL Accession /GB=C33037 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19B4.2 ENSEMBL cdna:known chromosome:CEL140:I:5691841:5697505:1 gene:T19B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5697144-5697424(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37636 Nuclear pore complex protein protein 7 [Caenorhabditis elegans] ref|NP_491665.1| Nuclear Pore complex Protein family member (npp-7) [Caenorhabditis elegans] 0.0
blast CAE68938 Hypothetical protein CBG14918 [Caenorhabditis briggsae] 0.0
blast AAO52512 similar to Streptococcus pneumoniae. Cell wall surface anchor family protein [Dictyostelium discoideum] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174124_AT
ccatcgggttaatacacttttcgctgtgactgatttcaaaaatgtttagattacccgtta
ttttgttttcttttttagacagcccccccacacatttccatttaattttgctcaaattcc
gaaacacaactttcaagttttcaacaccgagccttttgagttctagctagagctacttcc
cctttgttttcatttgaatgttttctttccgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCGGGTTAATACACTTTTCGCT 566 269 20 Antisense
AATACACTTTTCGCTGTGACTGATT 151 173 30 Antisense
ACTTTTCGCTGTGACTGATTTCAAA 616 101 35 Antisense
CCCCACACATTTCCATTTAATTTTG 605 259 105 Antisense
ACATTTCCATTTAATTTTGCTCAAA 336 105 111 Antisense
TTTGCTCAAATTCCGAAACACAACT 301 667 126 Antisense
CTTTCAAGTTTTCAACACCGAGCCT 698 211 149 Antisense
AACACCGAGCCTTTTGAGTTCTAGC 352 135 162 Antisense
AGTTCTAGCTAGAGCTACTTCCCCT 670 63 178 Antisense
CTTCCCCTTTGTTTTCATTTGAATG 669 219 195 Antisense
CATTTGAATGTTTTCTTTCCGATTT 289 213 210 Antisense
Sequence Source Affymetrix Proprietary Database