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[174122_s_at]

Description C59279_rc /REP_DB=TREMBL Accession /GB=C59279 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 42      6grp_highest_nonorm > 80      6grp_total > 30      4grp_total > 56      6grp_cgc > 81      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 172.1
(-0)
P 		255.3
(1.8)
P 		312
(3)
P 		35
(-3)
A 		277
B 193.7
(-0.1)
P 		239.7
(0.7)
P 		374.3
(3)
P 		20.8
(-3)
A 		354
C 170.4
(-1.2)
P 		286.9
(0.5)
P 		461.5
(3)
P 		49.8
(-3)
A 		412
avr 178.7
(-0.5) 		260.6
(0.9) 		382.6
(3) 		35.2
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 180.7
(-1.4)
P 		339.6
(1.8)
P 		402.4
(3)
P 		249.2
(-0)
P 		184.4
(-1.3)
P 		98.8
(-3)
P 		304
B 184.6
(-1.5)
P 		346.8
(1.4)
P 		434.5
(3)
P 		234.5
(-0.6)
P 		166.3
(-1.8)
P 		99.8
(-3)
P 		335
C 217.3
(-0.7)
P 		331.7
(1.3)
P 		434.3
(3)
P 		178.1
(-1.4)
P 		186.9
(-1.2)
P 		81.8
(-3)
P 		353
avr 194.2
(-1.2) 		339.4
(1.5) 		423.7
(3) 		220.6
(-0.7) 		179.2
(-1.4) 		93.5
(-3) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 62.7
(1.5)
P 		55.4
(0.9)
P 		81.6
(3)
P 		5.1
(-3)
A 		77
B 61.8
(1.2)
P 		59.2
(1)
P 		86.7
(3)
P 		4.4
(-3)
A 		82
C 56.4
(-1.1)
P 		82.5
(-0.1)
P 		160.8
(3)
P 		8.4
(-3)
A 		152
avr 60.3
(0.1) 		65.7
(0.5) 		109.7
(3) 		6
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 33.3
(-2.4)
P 		120.8
(3)
P 		87.6
(0.9)
P 		63.2
(-0.6)
P 		55.6
(-1)
P 		24.1
(-3)
P 		97
B 64.2
(-0.9)
P 		115.4
(3)
P 		105.5
(2.2)
P 		62.1
(-1.1)
P 		67.6
(-0.7)
P 		37.2
(-3)
P 		78
C 80.6
(0.8)
P 		101.2
(2.3)
P 		110.5
(3)
P 		35.8
(-2.4)
P 		60.5
(-0.6)
P 		27.4
(-3)
P 		83
avr 59.4
(-0.8) 		112.5
(3) 		101.2
(2.2) 		53.7
(-1.3) 		61.2
(-0.7) 		29.6
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174122_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21425
Sequence Type Exemplar sequence
Representative Public ID C59279 NCBI
Target Description C59279_rc /REP_DB=TREMBL Accession /GB=C59279 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028200(11), NM_069133(11), NM_069132(11), NM_001028199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028200 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 None
NM_069133 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 A 
NM_069132 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 A 
NM_001028199 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 None
SNAP00000029869 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8854528:8857427:1 11/11 None
GENEFINDER00000029874 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8856457:8857427:1 11/11 None
T11B7.4d ENSEMBL cdna:known chromosome:CEL140:IV:8852482:8862209:1 gene:T11B7.4 11/11 A 
T11B7.4a ENSEMBL cdna:known chromosome:CEL140:IV:8852496:8860416:1 gene:T11B7.4 11/11 None
T11B7.4b ENSEMBL cdna:known chromosome:CEL140:IV:8852496:8862012:1 gene:T11B7.4 11/11 A 
T11B7.4c ENSEMBL cdna:known chromosome:CEL140:IV:8854519:8862012:1 gene:T11B7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8857214-8860412(+) 100.0 100.0
Public Domain and Genome References
Ensembl T11B7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90991 Hypothetical protein T11B7.4d [Caenorhabditis elegans] emb|CAA90978.1| Hypothetical protein T11B7.4d [Caenorhabditis elegans] ref|NP_001023371.1| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAE52902 Hypothetical protein T11B7.4c [Caenorhabditis elegans] emb|CAE52905.1| Hypothetical protein T11B7.4c [Caenorhabditis elegans] ref|NP_001023370.1| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAE52903 Hypothetical protein T11B7.4a [Caenorhabditis elegans] emb|CAE52906.1| Hypothetical protein T11B7.4a [Caenorhabditis elegans] ref|NP_501533.2| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAB54312 Hypothetical protein T11B7.4b [Caenorhabditis elegans] emb|CAB54190.2| Hypothetical protein T11B7.4b [Caenorhabditis elegans] ref|NP_501534.2| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-6
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-6
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-6
Sequence
Target Sequence 
>C. ELEGANS:174122_S_AT
ccaactgcagcttttggcgcagatctttcaaagtctgtgacctatggaggaggtgttggt
ccaggtggtactcattacgattctaaccgcttgtcaccagctccatctcaatactcgaca
caatcacggaatcaaagccaacaacactatcaacaacatgttgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTGCAGCTTTTGGCGCAGATC 179 277 24 Antisense
TGCAGCTTTTGGCGCAGATCTTTCA 199 579 29 Antisense
GATCTTTCAAAGTCTGTGACCTATG 150 419 45 Antisense
AGTCTGTGACCTATGGAGGAGGTGT 287 61 55 Antisense
GGAGGTGTTGGTCCAGGTGGTACTC 253 517 72 Antisense
GGTCCAGGTGGTACTCATTACGATT 291 497 81 Antisense
TCATTACGATTCTAACCGCTTGTCA 409 615 95 Antisense
CTCCATCTCAATACTCGACACAATC 616 235 124 Antisense
AATACTCGACACAATCACGGAATCA 179 173 133 Antisense
ACAATCACGGAATCAAAGCCAACAA 375 115 143 Antisense
CAACACTATCAACAACATGTTGTTC 298 189 165 Antisense
Sequence Source Affymetrix Proprietary Database