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[174121_at]

Description C30770_rc /REP_DB=TREMBL Accession /GB=C30770 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk258a8 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 2.8
(-3)
A 		4.3
(-1.3)
A 		8.2
(3)
A 		6.3
(0.9)
A 		5
B 15
(-2.8)
A 		21.4
(-1.5)
A 		14
(-3)
A 		42.7
(3)
A 		29
C 16.3
(2.9)
A 		3.8
(-3)
A 		16.5
(3)
A 		11.9
(0.8)
A 		13
avr 11.4
(-2.1) 		9.8
(-3) 		12.9
(-1.2) 		20.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 1
(-3)
A 		2.6
(-1.6)
A 		1.7
(-2.4)
A 		2.2
(-1.9)
A 		2.4
(-1.7)
A 		7.7
(3)
A 		7
B 3.1
(-2.8)
A 		13.6
(-0.5)
A 		14.7
(-0.3)
A 		2.4
(-3)
A 		20.2
(0.9)
A 		29.8
(3)
A 		27
C 17.8
(-1.3)
A 		9.6
(-2.4)
A 		14.2
(-1.8)
A 		5.1
(-3)
A 		18.8
(-1.2)
A 		51.2
(3)
P 		46
avr 7.3
(-2.1) 		8.6
(-1.8) 		10.2
(-1.4) 		3.2
(-3) 		13.8
(-0.6) 		29.6
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-2.5)
A 		0.9
(-3)
A 		2.1
(3)
A 		0.9
(-3)
A 		1
B 4.8
(-1.4)
A 		5.3
(-0.9)
A 		3.3
(-3)
A 		9.1
(3)
A 		6
C 5.4
(2.6)
A 		1.1
(-3)
A 		5.7
(3)
A 		2
(-1.8)
A 		5
avr 3.7
(1.9) 		2.4
(-3) 		3.7
(1.9) 		4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.9
(-0.5)
A 		0.4
(-2.3)
A 		0.5
(-1.9)
A 		0.7
(-1.2)
A 		1.9
(3)
A 		2
B 1.1
(-2.7)
A 		4.5
(-0.8)
A 		3.6
(-1.3)
A 		0.6
(-3)
A 		8.2
(1.3)
A 		11.1
(3)
A 		11
C 6.6
(-0.9)
A 		2.9
(-2.3)
A 		3.6
(-2)
A 		1
(-3)
A 		6.1
(-1.1)
A 		17.2
(3)
P 		16
avr 2.6
(-1.8) 		2.8
(-1.7) 		2.5
(-1.9) 		0.7
(-3) 		5
(-0.3) 		10.1
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21424
Sequence Type Exemplar sequence
Representative Public ID C30770 NCBI
Target Description C30770_rc /REP_DB=TREMBL Accession /GB=C30770 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk258a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F02H6.3b ENSEMBL cdna:known chromosome:CEL140:IV:14203430:14205265:1 gene:F02H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026609 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14204975-14205261(+) 100.0 100.0
Public Domain and Genome References
Ensembl F02H6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42281 Hypothetical protein F02H6.3b [Caenorhabditis elegans] ref|NP_502727.1| F02H6.3b [Caenorhabditis elegans] 4.0E-20
blast CAB05172 Hypothetical protein F02H6.3a [Caenorhabditis elegans] ref|NP_502726.1| F02H6.3a [Caenorhabditis elegans] 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174121_AT
acttcgtcacgtgctcatcgaaagtgagaaaattgtgaagatttgcctgttccaatatgc
tgcaatagtaaagcaaagtcaaattgacgggtgcatcaaatttcacgaaataaccacaat
tcttgatcaaatgatgtactttaattatccggaaccttaaattagcaattaaatttactt
tgaacataagatattcaaaaccttttctaattatgtgtggattttaatactatcttgagt
ttaactcttctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCGTCACGTGCTCATCGAAAGT 519 103 15 Antisense
AATTGTGAAGATTTGCCTGTTCCAA 251 179 45 Antisense
AGATTTGCCTGTTCCAATATGCTGC 442 65 53 Antisense
GCCTGTTCCAATATGCTGCAATAGT 410 283 59 Antisense
TGACGGGTGCATCAAATTTCACGAA 230 569 99 Antisense
GAAATAACCACAATTCTTGATCAAA 454 363 121 Antisense
GATGTACTTTAATTATCCGGAACCT 406 407 147 Antisense
TATCCGGAACCTTAAATTAGCAATT 700 609 160 Antisense
AAACCTTTTCTAATTATGTGTGGAT 492 125 212 Antisense
GTGTGGATTTTAATACTATCTTGAG 624 487 229 Antisense
CTATCTTGAGTTTAACTCTTCTACC 608 223 244 Antisense
Sequence Source Affymetrix Proprietary Database