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[174120_at] BEM-1/BUD5 suppressor-like

Description C38491_rc /REP_DB=TREMBL Accession /GB=C38491 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk493h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 43      4grp_high_8_8 > 56      6grp_highest_nonorm > 85      6grp_total > 69      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 742.6
(3)
P 		741.1
(2.9)
P 		680.8
(-3)
P 		693.1
(-1.8)
P 		62
B 721.9
(2.1)
P 		577.2
(-3)
P 		594.5
(-2.4)
P 		746.8
(3)
P 		170
C 787.7
(1.5)
P 		671
(-1.8)
P 		839.5
(3)
P 		627.2
(-3)
P 		212
avr 750.7
(3) 		663.1
(-3) 		704.9
(-0.1) 		689
(-1.2) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 936.8
(0.9)
P 		806.9
(-1.1)
P 		852.8
(-0.4)
P 		678.3
(-3)
P 		924.5
(0.7)
P 		1079.7
(3)
P 		401
B 719.2
(-1.5)
P 		758.2
(-0.9)
P 		618.9
(-3)
P 		794.2
(-0.4)
P 		697.9
(-1.8)
P 		1019.7
(3)
P 		401
C 876.7
(0.3)
P 		614.3
(-3)
P 		740.7
(-1.4)
P 		710.6
(-1.8)
P 		914
(0.8)
P 		1090.6
(3)
P 		476
avr 844.2
(-0.9) 		726.5
(-3) 		737.5
(-2.8) 		727.7
(-3) 		845.5
(-0.9) 		1063.3
(3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 270.4
(3)
P 		160.9
(-0.9)
P 		178
(-0.3)
P 		101.5
(-3)
P 		169
B 230.2
(3)
P 		142.6
(-2.7)
P 		137.8
(-3)
P 		159.1
(-1.6)
P 		92
C 260.8
(2)
P 		192.9
(-0.2)
P 		292.6
(3)
P 		105.8
(-3)
P 		187
avr 253.8
(3) 		165.5
(-1) 		202.8
(0.7) 		122.1
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 172.7
(-3)
P 		287
(3)
P 		185.7
(-2.3)
P 		172
(-3)
P 		279
(2.6)
P 		262.9
(1.7)
P 		115
B 250.2
(-0.4)
P 		252.4
(-0.3)
P 		150.3
(-3)
P 		210.4
(-1.4)
P 		283.6
(0.5)
P 		380.2
(3)
P 		230
C 324.9
(1.9)
P 		187.4
(-1.8)
P 		188.5
(-1.8)
P 		142.9
(-3)
P 		295.7
(1.1)
P 		365.1
(3)
P 		222
avr 249.3
(-0.2) 		242.3
(-0.5) 		174.8
(-3) 		175.1
(-3) 		286.1
(1.1) 		336.1
(3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20180
Sequence Type Exemplar sequence
Representative Public ID C38491 NCBI
Target Description C38491_rc /REP_DB=TREMBL Accession /GB=C38491 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk493h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059809 NCBI Caenorhabditis elegans K04G2.2 (K04G2.2) mRNA, complete cds. 11/11 None
K04G2.2 ENSEMBL cdna:known chromosome:CEL140:I:8039080:8041003:1 gene:K04G2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8040502-8040869(+) 100.0 100.0
Public Domain and Genome References
Gene Title BEM-1/BUD5 suppressor-like
Ensembl K04G2.2
Entrez Gene 172585 Entrez gene
SwissProt Q21221 EMBL-EBI
WormBase CE37533 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249551_AT expressed protein at
DROSOPHILA_2:1640060_AT dm
DROSOPHILA_2:1639117_A_AT dm
CHICKEN:GGA.7924.1.S1_S_AT hypothetical protein LOC415479 gga
HU35KSUBA:RC_AA143763_AT hypothetical protein from EUROIMAGE 588495 hs
HU35KSUBA:R60368_AT hypothetical protein from EUROIMAGE 588495 hs
U133_X3P:HS.26765.0.S1_3P_AT hypothetical protein from EUROIMAGE 588495 hs
HG-U133_PLUS_2:225436_AT hypothetical protein from EUROIMAGE 588495 hs
HG-U133B:225436_AT hypothetical protein from EUROIMAGE 588495 hs
HG-U95B:44115_AT hypothetical protein from EUROIMAGE 588495 hs
MG-U74BV2:106274_AT RIKEN cDNA 2210412D01 gene mm
MOE430A:1423519_AT RIKEN cDNA 2210412D01 gene mm
MOUSE430A_2:1423519_AT RIKEN cDNA 2210412D01 gene mm
MOUSE430_2:1423519_AT RIKEN cDNA 2210412D01 gene mm
MOUSE430_2:1447179_AT RIKEN cDNA 2210412D01 gene (2210412D01Rik), mRNA mm
MOE430B:1447179_AT RIKEN cDNA 2210412D01 gene (2210412D01Rik), mRNA mm
MU19KSUBB:TC31594_AT RIKEN cDNA 2210412D01 gene (2210412D01Rik), mRNA mm
MU19KSUBB:TC34194_AT RIKEN cDNA 2210412D01 gene (2210412D01Rik), mRNA mm
RG-U34C:RC_AI232269_AT similar to RIKEN cDNA 2210412D01 (predicted) rn
RAE230A:1389393_AT similar to RIKEN cDNA 2210412D01 (predicted) rn
RAT230_2:1389393_AT similar to RIKEN cDNA 2210412D01 (predicted) rn
RAE230A:1373315_AT Similar to RIKEN cDNA 2210412D01 (predicted) rn
RAT230_2:1373315_AT Similar to RIKEN cDNA 2210412D01 (predicted) rn
RG-U34C:RC_AI176425_AT Similar to RIKEN cDNA 2210412D01 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB00039 Hypothetical protein K04G2.2 [Caenorhabditis elegans] ref|NP_492210.2| K04G2.2 [Caenorhabditis elegans] 1.0E-166
blast CAE63700 Hypothetical protein CBG08215 [Caenorhabditis briggsae] 1.0E-145
blast AAH45350 Hypothetical protein MGC55468 [Danio rerio] ref|NP_956451.1| hypothetical protein LOC393126 [Danio rerio] 3.0E-91
Sequence
Target Sequence 
>C. ELEGANS:174120_AT
ctacccaattcgcgtgttttgtacgtgtaacaaaatattttgtattctaacgcaatttat
gatcatcactcagcctattgggattaatgatgttcatgaaaatgcggagagtactgtatt
tctcgtctgttacccaaattccacacacaagttcatctgctccgacgggactttaaattt
ttcttgtttaagcataattccatttttctagtgtacccaaaaaatcccttcatcccaaac
tttatctttaattactgctcacttttaaatttgttgtcgttttttttctcaaaaacttta
tctgtaatatgctttcatccaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACCCAATTCGCGTGTTTTGTACG 21 3 26 Antisense
GATCATCACTCAGCCTATTGGGATT 205 421 86 Antisense
AGTACTGTATTTCTCGTCTGTTACC 233 63 135 Antisense
TCTGTTACCCAAATTCCACACACAA 211 607 151 Antisense
ATTCCACACACAAGTTCATCTGCTC 504 7 163 Antisense
TTCATCTGCTCCGACGGGACTTTAA 520 687 177 Antisense
TAATTCCATTTTTCTAGTGTACCCA 60 635 220 Antisense
TAGTGTACCCAAAAAATCCCTTCAT 13 647 234 Antisense
CTTCATCCCAAACTTTATCTTTAAT 262 221 253 Antisense
TTATCTTTAATTACTGCTCACTTTT 640 679 267 Antisense
ATCTGTAATATGCTTTCATCCAACG 72 35 325 Antisense
Sequence Source Affymetrix Proprietary Database