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[174119_at]

Description C33067_rc /REP_DB=TREMBL Accession /GB=C33067 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 02      6grp_total > 27      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13321
1 2 3 4 range
A 4889.3
(-1.7)
P 		3101.9
(-2.5)
P 		1974.1
(-3)
P 		15225.1
(3)
P 		13251
B 4502.3
(-1.8)
P 		2407.1
(-2.8)
P 		2020.6
(-3)
P 		14343.8
(3)
P 		12323
C 3245.2
(-2.4)
P 		2730
(-2.6)
P 		1904.1
(-3)
P 		14941.7
(3)
P 		13038
avr 4212.3
(-2) 		2746.3
(-2.6) 		1966.3
(-3) 		14836.9
(3) 		12871

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2925
1 2 3 4 5 6 range
A 4470.1
(3)
P 		2749.3
(-0.7)
P 		2112.8
(-2)
P 		1658.3
(-3)
P 		2245.8
(-1.7)
P 		2729.1
(-0.7)
P 		2812
B 3448.8
(3)
P 		2404.4
(-0.3)
P 		1545.6
(-3)
P 		2663.6
(0.5)
P 		1933.4
(-1.8)
P 		2458.3
(-0.1)
P 		1903
C 2705.8
(2.5)
P 		2790.2
(3)
P 		2481.6
(1.3)
P 		2037.1
(-1.1)
P 		1724.1
(-2.7)
P 		1674.8
(-3)
P 		1115
avr 3541.6
(3) 		2648
(-0.4) 		2046.7
(-2.7) 		2119.7
(-2.4) 		1967.8
(-3) 		2287.4
(-1.8) 		1574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2589
1 2 3 4 range
A 1780.2
(1.4)
P 		673.3
(-2.4)
P 		516.1
(-3)
P 		2228.7
(3)
P 		1713
B 1435.7
(-0.8)
P 		594.5
(-2.7)
P 		468.2
(-3)
P 		3056.7
(3)
P 		2589
C 1074.3
(-1.7)
P 		784.9
(-2.6)
P 		663.6
(-3)
P 		2519.4
(3)
P 		1856
avr 1430.1
(-0.4) 		684.2
(-2.6) 		549.3
(-3) 		2601.6
(3) 		2052

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 824
(1.3)
P 		977.8
(3)
P 		460.1
(-2.6)
P 		420.6
(-3)
P 		677.7
(-0.2)
P 		664.4
(-0.4)
P 		557
B 1200
(3)
P 		800.3
(0.1)
P 		375.3
(-3)
P 		705.5
(-0.6)
P 		785.5
(-0)
P 		916.7
(0.9)
P 		825
C 1002.9
(3)
P 		851.4
(1.5)
P 		631.6
(-0.8)
P 		409.7
(-3)
P 		557.9
(-1.5)
P 		560.6
(-1.5)
P 		593
avr 1009
(3) 		876.5
(1.5) 		489
(-3) 		511.9
(-2.7) 		673.7
(-0.9) 		713.9
(-0.4) 		520
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20740
Sequence Type Exemplar sequence
Representative Public ID C33067 NCBI
Target Description C33067_rc /REP_DB=TREMBL Accession /GB=C33067 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08A2.5a.4 ENSEMBL cdna:known chromosome:CEL140:II:2976634:2986976:1 gene:K08A2.5 11/11 None
K08A2.5a.3 ENSEMBL cdna:known chromosome:CEL140:II:2978404:2986976:1 gene:K08A2.5 11/11 None
K08A2.5a.2 ENSEMBL cdna:known chromosome:CEL140:II:2978404:2986976:1 gene:K08A2.5 11/11 None
K08A2.5a.1 ENSEMBL cdna:known chromosome:CEL140:II:2978411:2986976:1 gene:K08A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2986654-2986934(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08A2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39914 Nuclear hormone receptor family protein 88, isoform a [Caenorhabditis elegans] ref|NP_001022235.1| Nuclear Hormone Receptor family member (nhr-88) [Caenorhabditis elegans] 0.0
blast AAG15179 nuclear receptor NHR-88 [Caenorhabditis elegans] 0.0
blast CAE72437 Hypothetical protein CBG19604 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.8E-27
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.3E-48
Sequence
Target Sequence 
>C. ELEGANS:174119_AT
aaaatctttctcgttgtgtccgttgtgtgttttctatttccagcagtaggtatccatttt
tcgcctacttttttcatttttattttcaaagttcccggttgaaatatatggctagtccac
caccaccccttccttgtatataatcaaaaagaagaaatgtacaataaccccaatttccta
caaattttcaccacacttccgagcccccgcgtgagattctccaagttttctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCTTTCTCGTTGTGTCCGTTG 87 133 23 Antisense
CTCGTTGTGTCCGTTGTGTGTTTTC 303 233 32 Antisense
GTGTGTTTTCTATTTCCAGCAGTAG 670 487 47 Antisense
CAGCAGTAGGTATCCATTTTTCGCC 26 205 63 Antisense
TAGGTATCCATTTTTCGCCTACTTT 94 653 69 Antisense
AAGTTCCCGGTTGAAATATATGGCT 581 149 111 Antisense
GAAATATATGGCTAGTCCACCACCA 371 363 123 Antisense
TGTACAATAACCCCAATTTCCTACA 148 559 180 Antisense
TACAAATTTTCACCACACTTCCGAG 261 643 201 Antisense
CCCCGCGTGAGATTCTCCAAGTTTT 250 261 227 Antisense
CGTGAGATTCTCCAAGTTTTCTACA 48 245 232 Antisense
Sequence Source Affymetrix Proprietary Database