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[174118_at]

Description C53344_rc /REP_DB=TREMBL Accession /GB=C53344 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 85      6grp_total > 48      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 815
1 2 3 4 range
A 1011.9
(3)
P 		403.2
(-1.5)
P 		197.3
(-3)
P 		599.9
(-0)
P 		815
B 491.1
(1.3)
P 		285.6
(-2.2)
P 		239
(-3)
P 		592.7
(3)
P 		354
C 1008.9
(3)
P 		435.3
(-3)
P 		534.5
(-2)
P 		452
(-2.8)
P 		574
avr 837.3
(3) 		374.7
(-2.4) 		323.6
(-3) 		548.2
(-0.4) 		514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 703
1 2 3 4 5 6 range
A 996.5
(3)
P 		554.4
(-3)
P 		574.6
(-2.7)
P 		594.6
(-2.5)
P 		849.8
(1)
P 		885.5
(1.5)
P 		442
B 905.3
(1.9)
P 		708.6
(0.2)
P 		327.9
(-3)
P 		930.3
(2.1)
P 		747.1
(0.6)
P 		1030.8
(3)
P 		703
C 766
(0.9)
P 		702.9
(0)
P 		741.6
(0.5)
P 		926.2
(3)
P 		479.1
(-3)
P 		712.7
(0.1)
P 		447
avr 889.3
(3) 		655.3
(-1.1) 		548
(-3) 		817
(1.7) 		692
(-0.5) 		876.3
(2.8) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 368.4
(3)
P 		87.5
(-2.3)
P 		51.6
(-3)
P 		87.8
(-2.3)
P 		317
B 156.6
(3)
P 		70.5
(-2.1)
P 		55.4
(-3)
P 		126.3
(1.2)
P 		101
C 334
(3)
P 		125.2
(-1.9)
P 		186.3
(-0.4)
P 		76.2
(-3)
P 		258
avr 286.3
(3) 		94.4
(-3) 		97.8
(-2.9) 		96.8
(-2.9) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 183.7
(-0.3)
P 		197.2
(0.3)
P 		125.1
(-3)
P 		150.8
(-1.8)
P 		256.4
(3)
P 		215.6
(1.1)
P 		131
B 315
(1.6)
P 		235.8
(0.1)
P 		79.6
(-3)
P 		246.4
(0.3)
P 		303.5
(1.4)
P 		384.4
(3)
P 		305
C 283.9
(3)
P 		214.5
(-0.2)
P 		188.8
(-1.4)
P 		186.3
(-1.5)
P 		155
(-3)
P 		238.6
(0.9)
P 		129
avr 260.9
(2.2) 		215.8
(0.4) 		131.2
(-3) 		194.5
(-0.4) 		238.3
(1.3) 		279.5
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21021
Sequence Type Exemplar sequence
Representative Public ID C53344 NCBI
Target Description C53344_rc /REP_DB=TREMBL Accession /GB=C53344 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk297e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066017 NCBI Caenorhabditis elegans T26A5.5a (T26A5.5) mRNA, complete cds. 11/11 None
T26A5.5a ENSEMBL cdna:known chromosome:CEL140:III:6454639:6459947:1 gene:T26A5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175919 2 1 NM_066017 174118_at (11), 184061_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6459595-6459878(+) 100.0 100.0
Public Domain and Genome References
Ensembl T26A5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498418 T26A5.5a [Caenorhabditis elegans] gb|AAN65291.1| Hypothetical protein T26A5.5a [Caenorhabditis elegans] 0.0
blast T34385 hypothetical protein T26A5.5 - Caenorhabditis elegans 0.0
blast NP_498419 T26A5.5b [Caenorhabditis elegans] gb|AAN65292.1| Hypothetical protein T26A5.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.3E-7
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 3.4E-6
Sequence
Target Sequence 
>C. ELEGANS:174118_AT
tcaagctacctcaatttgcaatgttattcaaacacctattgctgttcatttttcattcca
aattatctatctttacccgttttttactcctcccatttttcaaaaataattttatctgca
acgtcgtggtctgatgatgattctcgtacagaaattcttttttgcatctcaatgtttcca
actaatttcccgtcgatatccgttgttttttatctatcgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCTACCTCAATTTGCAATGTT 143 631 17 Antisense
TTGCAATGTTATTCAAACACCTATT 181 705 32 Antisense
CACCTATTGCTGTTCATTTTTCATT 27 203 49 Antisense
TCCAAATTATCTATCTTTACCCGTT 16 589 73 Antisense
AATTTTATCTGCAACGTCGTGGTCT 406 175 124 Antisense
ACGTCGTGGTCTGATGATGATTCTC 404 95 137 Antisense
GATGATTCTCGTACAGAAATTCTTT 77 411 152 Antisense
ACAGAAATTCTTTTTTGCATCTCAA 660 107 164 Antisense
TTTTGCATCTCAATGTTTCCAACTA 574 677 176 Antisense
TAATTTCCCGTCGATATCCGTTGTT 414 633 199 Antisense
TCCGTTGTTTTTTATCTATCGTATT 546 595 215 Antisense
Sequence Source Affymetrix Proprietary Database