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[174117_at] YL-1 protein like

Description C58475_rc /REP_DB=TREMBL Accession /GB=C58475 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 494.3
(3)
P 		312.9
(-3)
P 		319.1
(-2.8)
P 		376.8
(-0.9)
P 		181
B 508.5
(3)
P 		278.2
(-3)
P 		308.7
(-2.2)
P 		391.1
(-0.1)
P 		230
C 413.1
(3)
P 		410.4
(2.9)
P 		230.2
(-3)
P 		370.9
(1.6)
P 		183
avr 472
(3) 		333.8
(-1.5) 		286
(-3) 		379.6
(0) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 693.3
(3)
P 		352.4
(-1.1)
P 		228.8
(-2.6)
P 		197.9
(-3)
P 		367
(-1)
P 		518.6
(0.9)
P 		495
B 461.7
(1.4)
P 		326
(-1.2)
P 		289
(-2)
P 		387.8
(-0)
P 		237.3
(-3)
P 		540.2
(3)
P 		303
C 383.5
(-0.3)
P 		403.6
(0.1)
P 		264.8
(-2.4)
P 		362.1
(-0.7)
P 		234.6
(-3)
P 		563.6
(3)
P 		329
avr 512.8
(2.4) 		360.7
(-0.9) 		260.9
(-3) 		315.9
(-1.8) 		279.6
(-2.6) 		540.8
(3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 180
(3)
P 		67.9
(-2.4)
P 		83.4
(-1.6)
P 		55.2
(-3)
P 		125
B 162.1
(3)
P 		68.7
(-3)
P 		71.5
(-2.8)
P 		83.3
(-2.1)
P 		93
C 136.8
(3)
P 		118
(1.5)
P 		80.2
(-1.6)
P 		62.5
(-3)
P 		74
avr 159.6
(3) 		84.9
(-1.8) 		78.4
(-2.3) 		67
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 127.8
(3)
P 		125.3
(2.8)
P 		49.8
(-3)
P 		50.2
(-3)
P 		110.7
(1.7)
P 		126.3
(2.9)
P 		78
B 160.6
(1.1)
P 		108.5
(-1.2)
P 		70.2
(-3)
P 		102.7
(-1.5)
P 		96.4
(-1.8)
P 		201.4
(3)
P 		131
C 142.1
(0.7)
P 		123.2
(-0.2)
P 		67.4
(-3)
P 		72.8
(-2.7)
P 		75.9
(-2.6)
P 		188.7
(3)
P 		121
avr 143.5
(1.4) 		119
(0.1) 		62.5
(-3) 		75.2
(-2.3) 		94.3
(-1.3) 		172.1
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20321
Sequence Type Exemplar sequence
Representative Public ID C58475 NCBI
Target Description C58475_rc /REP_DB=TREMBL Accession /GB=C58475 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060104 NCBI Caenorhabditis elegans C17E4.6 (C17E4.6) mRNA, complete cds. 11/11 None
C17E4.6 ENSEMBL cdna:known chromosome:CEL140:I:9430680:9439236:1 gene:C17E4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9438819-9439104(+) 85.96 100.0
Public Domain and Genome References
Gene Title YL-1 protein like
Ensembl C17E4.6
Entrez Gene 172769 Entrez gene
SwissProt Q93230 EMBL-EBI
WormBase CE25780 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02747 Hypothetical protein C17E4.6 [Caenorhabditis elegans] ref|NP_492505.1| C17E4.6 [Caenorhabditis elegans] 0.0
blast CAE60186 Hypothetical protein CBG03742 [Caenorhabditis briggsae] 1.0E-87
blast CAE60187 Hypothetical protein CBG03744 [Caenorhabditis briggsae] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR008895 EMBL-EBI YL1 nuclear 3.5E-44
Pfam IPR008895 EMBL-EBI YL1 nuclear 8.1E-35
Pfam IPR008895 EMBL-EBI YL1 nuclear 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:174117_AT
tctatgtctgcatcttctttcatttttctccactgccgccgccgccaccaccaccaacat
caccgccgcgtcgcttcgaaattcgtctaaaatttgccctccttccatcctcggcgcagc
atataccatcagcactgcccgccgagacagtagtgtggctccattttatttgtagatctc
ttgcaaacttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATGTCTGCATCTTCTTTCATTT 363 615 40 Antisense
TATGTCTGCATCTTCTTTCATTTTT 616 655 42 Antisense
CCGCGTCGCTTCGAAATTCGTCTAA 224 263 105 Antisense
TCGAAATTCGTCTAAAATTTGCCCT 492 601 115 Antisense
GCAGCATATACCATCAGCACTGCCC 607 313 155 Antisense
CTGCCCGCCGAGACAGTAGTGTGGC 442 237 174 Antisense
CCGCCGAGACAGTAGTGTGGCTCCA 431 261 178 Antisense
GAGACAGTAGTGTGGCTCCATTTTA 561 393 183 Antisense
AGTGTGGCTCCATTTTATTTGTAGA 608 59 191 Antisense
GGCTCCATTTTATTTGTAGATCTCT 591 539 196 Antisense
TTGTAGATCTCTTGCAAACTTCCCC 593 705 209 Antisense
Sequence Source Affymetrix Proprietary Database