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[174114_at]

Description C29640_rc /REP_DB=TREMBL Accession /GB=C29640 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk196d7 : 3prime end, single read.
Cluster 6grp_total > 65      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 22
(-0.1)
A 		3.3
(-3)
A 		41.7
(3)
A 		26.8
(0.7)
A 		38
B 3.2
(-3)
A 		27.3
(3)
A 		7.9
(-1.8)
A 		24.5
(2.3)
A 		24
C 4.1
(0.6)
A 		5.2
(2.8)
A 		2.3
(-3)
A 		5.3
(3)
A 		3
avr 9.8
(-3) 		11.9
(-1.6) 		17.3
(1.9) 		18.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5
(-2)
A 		2.4
(-2.7)
A 		22
(3)
A 		16.3
(1.3)
A 		1.5
(-3)
A 		14
(0.7)
A 		21
B 2.5
(-2.6)
A 		4.7
(-1.5)
A 		5.8
(-0.9)
A 		13.4
(3)
A 		3
(-2.4)
A 		1.8
(-3)
A 		12
C 3.1
(-2.6)
A 		14.1
(0)
A 		4.6
(-2.3)
A 		5.1
(-2.2)
A 		1.6
(-3)
A 		26.4
(3)
A 		25
avr 3.5
(-2.3) 		7.1
(-0.5) 		10.8
(1.4) 		11.6
(1.8) 		2
(-3) 		14.1
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8
(1.3)
A 		0.7
(-3)
A 		10.9
(3)
A 		3.9
(-1.1)
A 		10
B 1
(-3)
A 		6.7
(3)
A 		1.8
(-2.2)
A 		5.2
(1.4)
A 		6
C 1.4
(2.1)
A 		1.5
(3)
A 		0.8
(-3)
A 		0.9
(-2.1)
A 		1
avr 3.5
(-1) 		3
(-3) 		4.5
(3) 		3.3
(-1.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.9
(-2.4)
A 		0.8
(-2.6)
A 		4.8
(3)
A 		4.1
(2)
A 		0.5
(-3)
A 		3.4
(1)
A 		4
B 0.9
(-2.6)
A 		1.6
(-1.1)
A 		1.4
(-1.5)
A 		3.5
(3)
A 		1.2
(-1.9)
A 		0.7
(-3)
A 		3
C 1.2
(-2.5)
A 		4.3
(-0.3)
A 		1.2
(-2.5)
A 		1
(-2.6)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
avr 1
(-2.5) 		2.2
(-0.5) 		2.5
(0) 		2.9
(0.7) 		0.7
(-3) 		4.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21413
Sequence Type Exemplar sequence
Representative Public ID C29640 NCBI
Target Description C29640_rc /REP_DB=TREMBL Accession /GB=C29640 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk196d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004227 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14061338:14068439:-1 11/11 None
Y37A1B.2a ENSEMBL cdna:known chromosome:CEL140:IV:14066295:14069823:-1 gene:Y37A1B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14066310-14066591(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAA19487 Hypothetical protein Y37A1B.2b [Caenorhabditis elegans] ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAA19486 Hypothetical protein Y37A1B.2a [Caenorhabditis elegans] ref|NP_502694.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 5.0E-64
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 5.0E-51
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 5.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 6.0E-15
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Sequence
Target Sequence 
>C. ELEGANS:174114_AT
tcttctcttcggacatttcatttctaatcattcgaaattctctctcttcgtcgtcggctg
cgactatttaaatgtcatccagatttatttgctactactacaacaacttctgctgctgct
gaaattttcgcgaatgctgtttgctcgtggacgatcctcgagctttatcgctctagatca
tctacaagttaatcagtcgccgtcgtttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCTTCGGACATTTCATTTCT 524 617 43 Antisense
CATTCGAAATTCTCTCTCTTCGTCG 132 217 71 Antisense
CTTCGTCGTCGGCTGCGACTATTTA 201 217 88 Antisense
CATCCAGATTTATTTGCTACTACTA 407 211 118 Antisense
ACTACTACAACAACTTCTGCTGCTG 524 101 136 Antisense
GCTGCTGCTGAAATTTTCGCGAATG 284 297 154 Antisense
TTCGCGAATGCTGTTTGCTCGTGGA 461 697 169 Antisense
TGTTTGCTCGTGGACGATCCTCGAG 403 561 180 Antisense
GATCCTCGAGCTTTATCGCTCTAGA 637 415 195 Antisense
GCTTTATCGCTCTAGATCATCTACA 700 303 204 Antisense
GTTAATCAGTCGCCGTCGTTTCAAA 532 445 230 Antisense
Sequence Source Affymetrix Proprietary Database