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[174113_at]

Description C32875_rc /REP_DB=TREMBL Accession /GB=C32875 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 26      4grp_high_8_8 > 63      6grp_highest_nonorm > 82      6grp_total > 59      4grp_total > 56      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 569
1 2 3 4 range
A 552.4
(1)
P 		441.4
(-0.3)
P 		721.9
(3)
P 		214.1
(-3)
P 		508
B 684.9
(1.9)
P 		465.1
(-2.1)
P 		743.9
(3)
P 		416.7
(-3)
P 		327
C 412.4
(-3)
P 		602.3
(0.1)
P 		783.5
(3)
P 		458.2
(-2.3)
P 		371
avr 549.9
(-0.1) 		502.9
(-0.8) 		749.8
(3) 		363
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 402.5
(0.6)
P 		409.1
(0.7)
P 		255.9
(-2.4)
P 		226.6
(-3)
P 		245.4
(-2.6)
P 		519.9
(3)
P 		293
B 244.3
(-1.9)
P 		412.9
(0.6)
P 		173.8
(-3)
P 		201.4
(-2.6)
P 		499
(2)
P 		567
(3)
P 		393
C 477.1
(3)
P 		219.9
(-3)
P 		315.6
(-0.8)
P 		310.5
(-0.9)
P 		286.9
(-1.4)
P 		400.9
(1.2)
P 		257
avr 374.6
(0.1) 		347.3
(-0.6) 		248.4
(-2.9) 		246.2
(-3) 		343.8
(-0.7) 		495.9
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 201.1
(3)
P 		95.8
(-0.7)
P 		188.7
(2.6)
P 		31.3
(-3)
P 		170
B 218.4
(3)
P 		114.9
(-1.8)
P 		172.4
(0.9)
P 		88.8
(-3)
P 		130
C 136.5
(-1.2)
P 		173.2
(-0.1)
P 		273.1
(3)
P 		77.3
(-3)
P 		196
avr 185.3
(1.9) 		128
(-0.4) 		211.4
(3) 		65.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 74.2
(-1.8)
P 		145.5
(3)
P 		55.7
(-3)
P 		57.5
(-2.9)
P 		74
(-1.8)
P 		126.6
(1.7)
P 		90
B 85
(-1.5)
P 		137.5
(0.4)
P 		42.2
(-3)
P 		53.3
(-2.6)
P 		202.8
(2.7)
P 		211.4
(3)
P 		169
C 176.8
(3)
P 		67.1
(-2.8)
P 		80.3
(-2.1)
P 		62.4
(-3)
P 		92.8
(-1.4)
P 		134.2
(0.8)
P 		114
avr 112
(0.3) 		116.7
(0.6) 		59.4
(-2.9) 		57.7
(-3) 		123.2
(0.9) 		157.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20267
Sequence Type Exemplar sequence
Representative Public ID C32875 NCBI
Target Description C32875_rc /REP_DB=TREMBL Accession /GB=C32875 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170880 NCBI Caenorhabditis elegans F26B1.2a (F26B1.2) mRNA, complete cds. 11/11 None
F26B1.2a ENSEMBL cdna:known chromosome:CEL140:I:6325836:6331031:1 gene:F26B1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172330 5 1 NM_059424 189852_at (11)
NM_170880 174113_at (11), 189852_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6328068-6328359(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26B1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740869 F26B1.2a [Caenorhabditis elegans] gb|AAB37791.1| Hypothetical protein F26B1.2a [Caenorhabditis elegans] 1.0E-179
blast NP_491825 F26B1.2c [Caenorhabditis elegans] gb|AAO12447.1| Hypothetical protein F26B1.2c [Caenorhabditis elegans] 1.0E-170
blast CAE67162 Hypothetical protein CBG12588 [Caenorhabditis briggsae] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 1.9E-16
Pfam IPR004087 EMBL-EBI KH 1.6E-12
Pfam IPR004087 EMBL-EBI KH 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:174113_AT
gttcaattccttggaactttagccaaatttttattatctggaatccttattctcaaaacg
ttgttatcagtctcttgtccccacttggggtttgatctctctactatatcccgtttgtcc
caccaccaccacaacgcccaatattttcaaaaatgatatcattcgataccattcgaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATTCCTTGGAACTTTAGCCA 446 445 19 Antisense
CAATTCCTTGGAACTTTAGCCAAAT 235 179 22 Antisense
TATTATCTGGAATCCTTATTCTCAA 429 661 50 Antisense
TCCTTATTCTCAAAACGTTGTTATC 129 593 62 Antisense
AAACGTTGTTATCAGTCTCTTGTCC 283 127 74 Antisense
TCTCTTGTCCCCACTTGGGGTTTGA 441 605 89 Antisense
TCCCCACTTGGGGTTTGATCTCTCT 238 597 96 Antisense
ACTTGGGGTTTGATCTCTCTACTAT 216 101 101 Antisense
GGGTTTGATCTCTCTACTATATCCC 375 497 106 Antisense
AAATGATATCATTCGATACCATTCG 131 121 169 Antisense
GATATCATTCGATACCATTCGAAGT 689 425 173 Antisense
Sequence Source Affymetrix Proprietary Database