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[174112_at]

Description C55209_rc /REP_DB=TREMBL Accession /GB=C55209 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430d3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 73      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_total > 63      4grp_total > 50      6grp_cgc > 56      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 121.7
(-3)
P 		123.7
(-2.3)
P 		138.8
(3)
P 		129
(-0.4)
P 		17
B 143
(1.5)
P 		161.1
(3)
P 		138.8
(1.1)
P 		90.4
(-3)
P 		71
C 106.1
(-3)
P 		147.8
(3)
P 		122.1
(-0.7)
P 		146.5
(2.8)
P 		42
avr 123.6
(-2.6) 		144.2
(3) 		133.2
(0) 		122
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 176.6
(1.1)
P 		111.2
(-1.5)
P 		223.2
(3)
P 		75.3
(-3)
M 		185.3
(1.5)
P 		99
(-2)
P 		148
B 189.2
(-1.6)
P 		177.6
(-2.1)
P 		286
(3)
P 		223.4
(0)
P 		175.4
(-2.2)
P 		159.5
(-3)
P 		127
C 51.8
(-3)
P 		155.6
(-0.1)
P 		126.1
(-0.9)
P 		191.3
(0.9)
P 		102.2
(-1.6)
P 		265.9
(3)
P 		214
avr 139.2
(-3) 		148.1
(-2.3) 		211.8
(3) 		163.3
(-1) 		154.3
(-1.8) 		174.8
(-0.1) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 44.3
(3)
P 		26.9
(-1.1)
P 		36.3
(1.1)
P 		18.9
(-3)
P 		25
B 45.6
(3)
P 		39.8
(1.7)
P 		32.2
(-0.1)
P 		19.3
(-3)
P 		26
C 35.1
(0.5)
P 		42.5
(3)
P 		42.6
(3)
P 		24.7
(-3)
P 		18
avr 41.7
(3) 		36.4
(1.5) 		37
(1.6) 		21
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 32.6
(-0.8)
P 		39.6
(0.3)
P 		48.6
(1.8)
P 		19.1
(-3)
M 		55.9
(3)
P 		24.1
(-2.2)
P 		37
B 65.8
(0.3)
P 		59.1
(-3)
P 		69.5
(2.1)
P 		59.2
(-3)
P 		71.3
(3)
P 		59.5
(-2.8)
P 		12
C 19.2
(-3)
P 		47.5
(-0.6)
P 		32.1
(-1.9)
P 		38.5
(-1.3)
P 		33.1
(-1.8)
P 		89
(3)
P 		70
avr 39.2
(-2.9) 		48.7
(0.2) 		50.1
(0.6) 		38.9
(-3) 		53.4
(1.7) 		57.5
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21409
Sequence Type Exemplar sequence
Representative Public ID C55209 NCBI
Target Description C55209_rc /REP_DB=TREMBL Accession /GB=C55209 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55209
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55209 C55209_rc /REP_DB=TREMBL Accession /GB=C55209 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk430d3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008741 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7039102-7039476(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174112_AT
tcttgtcgactccttgaattcatcccatattgatatcttgttcgattttatttagtgagt
cttggaggctgaccaagtttgacgataaatggacaaaatccgcataatcatcgttgataa
gctcgatcattgaattttgaacacttttcaagtagaggcgtagatcctgctgaattgttt
tgagatcagattttgccttgccaagttcataaatcgttccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGTCGACTCCTTGAATTCATCC 459 617 15 Antisense
GACTCCTTGAATTCATCCCATATTG 337 375 22 Antisense
ATCCCATATTGATATCTTGTTCGAT 176 39 36 Antisense
TTTAGTGAGTCTTGGAGGCTGACCA 164 673 65 Antisense
GGAGGCTGACCAAGTTTGACGATAA 418 515 78 Antisense
GGACAAAATCCGCATAATCATCGTT 558 525 105 Antisense
ATCATCGTTGATAAGCTCGATCATT 676 29 121 Antisense
CACTTTTCAAGTAGAGGCGTAGATC 612 195 156 Antisense
GGCGTAGATCCTGCTGAATTGTTTT 480 541 171 Antisense
GATCAGATTTTGCCTTGCCAAGTTC 3 421 198 Antisense
GCCAAGTTCATAAATCGTTCCACAT 116 279 214 Antisense
Sequence Source Affymetrix Proprietary Database