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[174110_at]

Description C36544_rc /REP_DB=TREMBL Accession /GB=C36544 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk461g7 : 3prime end, single read.
Cluster 6grp_total > 39      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 1.5
(-3)
A 		37.7
(1.4)
A 		5.7
(-2.5)
A 		51.2
(3)
A 		50
B 2.6
(-3)
A 		11.4
(-0.2)
A 		21.5
(3)
A 		6.4
(-1.8)
A 		19
C 19
(-3)
A 		24.5
(-2.6)
A 		27.1
(-2.4)
A 		104.9
(3)
A 		86
avr 7.7
(-3) 		24.5
(-0.8) 		18.1
(-1.7) 		54.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 29
(2.6)
A 		13.1
(-0.7)
A 		13.4
(-0.7)
A 		2.2
(-3)
A 		31.1
(3)
P 		11.6
(-1)
A 		29
B 22
(1.8)
A 		21.5
(1.7)
A 		3.9
(-3)
A 		15.7
(0.1)
A 		19.2
(1.1)
A 		26.4
(3)
P 		23
C 1.8
(-3)
A 		35.4
(3)
P 		2.5
(-2.9)
A 		19
(0.1)
A 		11
(-1.4)
A 		21.9
(0.6)
A 		34
avr 17.6
(1) 		23.3
(3) 		6.6
(-3) 		12.3
(-1) 		20.4
(2) 		20
(1.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.5
(-3)
A 		8.2
(3)
A 		1.5
(-2.2)
A 		7.5
(2.5)
A 		8
B 0.8
(-3)
A 		2.8
(-0.1)
A 		5
(3)
A 		1.4
(-2.1)
A 		4
C 6.3
(-3)
A 		7
(-2.6)
A 		9.4
(-1.4)
A 		17.7
(3)
A 		11
avr 2.5
(-3) 		6
(0.3) 		5.3
(-0.4) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.3
(0.2)
A 		4.7
(-0.2)
A 		2.9
(-1.4)
A 		0.6
(-3)
A 		9.4
(3)
P 		2.8
(-1.5)
A 		9
B 7.6
(1.5)
A 		7.1
(1.1)
A 		0.9
(-3)
A 		4.2
(-0.8)
A 		7.8
(1.6)
A 		9.9
(3)
P 		9
C 0.7
(-2.9)
A 		10.8
(3)
P 		0.6
(-3)
A 		3.8
(-1.1)
A 		3.5
(-1.3)
A 		7.3
(0.9)
A 		10
avr 4.5
(0) 		7.5
(3) 		1.5
(-3) 		2.9
(-1.6) 		6.9
(2.4) 		6.7
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20732
Sequence Type Exemplar sequence
Representative Public ID C36544 NCBI
Target Description C36544_rc /REP_DB=TREMBL Accession /GB=C36544 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk461g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F34D6.1 ENSEMBL cdna:known chromosome:CEL140:II:2679163:2681218:-1 gene:F34D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2679171-2679451(-) 59.29 100.0
Public Domain and Genome References
Ensembl F34D6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71152 Hypothetical protein F34D6.1 [Caenorhabditis elegans] ref|NP_494331.1| F34D6.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:174110_AT
aatttcggccagactttggaatgtctcatttttcattgtttttatttgttttcttttaaa
ttcttgaattttctggaacttatactttctcttttcctccacccaccaagcctaagcctg
agcctatacctaagcctaaaactaggcctgagattaagcccaagccttagcccaagcctc
agcccaagcctaagcctaagcctattcctaagcctaagcctgaaactgagtataagccca
gcatacgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCGGCCAGACTTTGGAATGTC 18 173 13 Antisense
CGGCCAGACTTTGGAATGTCTCATT 48 243 18 Antisense
AATTCTTGAATTTTCTGGAACTTAT 619 175 71 Antisense
TTCTGGAACTTATACTTTCTCTTTT 602 689 83 Antisense
CCTGAGCCTATACCTAAGCCTAAAA 616 263 129 Antisense
GAGCCTATACCTAAGCCTAAAACTA 444 385 132 Antisense
ACCTAAGCCTAAAACTAGGCCTGAG 458 85 140 Antisense
CTAGGCCTGAGATTAAGCCCAAGCC 403 225 154 Antisense
TGAGATTAAGCCCAAGCCTTAGCCC 574 551 161 Antisense
TAAGCCTAAGCCTGAAACTGAGTAT 206 637 221 Antisense
CTGAGTATAAGCCCAGCATACGCCA 129 239 238 Antisense
Sequence Source Affymetrix Proprietary Database