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[174109_at]

Description C57244 /REP_DB=TREMBL Accession /GB=C57244 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk301a11 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 118.5
(-3)
M 		143.2
(-1.7)
A 		235.4
(3)
M 		201.3
(1.2)
P 		117
B 170.9
(2.6)
A 		151.6
(-3)
A 		172.3
(3)
A 		168.4
(1.9)
P 		21
C 93.3
(-3)
A 		159.7
(2)
A 		173
(3)
P 		165.5
(2.4)
P 		80
avr 127.6
(-3) 		151.5
(-0.8) 		193.6
(3) 		178.4
(1.6) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 77.6
(-3)
P 		102.7
(-1.2)
A 		78.2
(-3)
A 		104.8
(-1)
P 		146.5
(2)
P 		160.5
(3)
P 		83
B 93.2
(-3)
A 		124.7
(-0)
A 		120.1
(-0.5)
P 		109.7
(-1.4)
P 		142
(1.6)
P 		156.8
(3)
P 		64
C 145.7
(0.3)
M 		106.7
(-3)
M 		143.4
(0.1)
P 		135.2
(-0.6)
P 		178.5
(3)
P 		151.6
(0.8)
P 		72
avr 105.5
(-3) 		111.4
(-2.3) 		113.9
(-2) 		116.6
(-1.7) 		155.7
(2.9) 		156.3
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 43.2
(-0.4)
M 		31.1
(-2.7)
A 		61.5
(3)
M 		29.5
(-3)
P 		32
B 54.5
(3)
A 		37.4
(-2.5)
A 		39.9
(-1.7)
A 		35.9
(-3)
P 		19
C 30.9
(-2.4)
A 		45.9
(0.3)
A 		60.3
(3)
P 		27.9
(-3)
P 		32
avr 42.9
(0.1) 		38.1
(-1.2) 		53.9
(3) 		31.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14.3
(-3)
P 		36.5
(1.5)
A 		17
(-2.5)
A 		26.6
(-0.5)
P 		44.2
(3)
P 		39.1
(2)
P 		30
B 32.4
(-2.3)
A 		41.5
(-0.5)
A 		29.2
(-3)
P 		29.1
(-3)
P 		57.7
(2.8)
P 		58.5
(3)
P 		29
C 54
(2.3)
M 		32.6
(-1.9)
M 		36.5
(-1.2)
P 		27.2
(-3)
P 		57.8
(3)
P 		50.7
(1.6)
P 		31
avr 33.6
(-1.6) 		36.9
(-0.8) 		27.6
(-3) 		27.6
(-3) 		53.2
(3) 		49.4
(2.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21917
Sequence Type Exemplar sequence
Representative Public ID C57244 NCBI
Target Description C57244 /REP_DB=TREMBL Accession /GB=C57244 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk301a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000003147 ENSEMBL cdna:SNAP chromosome:CEL140:V:16930786:16932641:1 9/11 None
GENEFINDER00000003199 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16931910:16932641:1 9/11 None
Y102A5C.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16931745:16932641:1 gene:Y102A5C.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16932254-16932598(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y102A5C.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE72508 Hypothetical protein CBG19687 [Caenorhabditis briggsae] 1.0E-40
blast AAB47594 Ribosomal protein, small subunit protein 13 [Caenorhabditis elegans] ref|NP_498393.1| Ribosomal Protein, Small subunit family member (rps-13) [Caenorhabditis elegans] sp|P51404|RS13_CAEEL 40S ribosomal protein S13 3.0E-40
blast P62300 40S ribosomal protein S13 (40S ribosomal protein S15) sp|P62299|RS13_BRUPA 40S ribosomal protein S13 (17.4K protein) emb|CAA34603.1| unnamed protein product [Brugia pahangi] gb|AAA51420.1| ribosomal protein S13 gb|AAA30343.1| ribosomal protein S13 3.0E-33
blast CAE72508 Hypothetical protein CBG19687 [Caenorhabditis briggsae] 6.0E-21
blast AAB47594 Ribosomal protein, small subunit protein 13 [Caenorhabditis elegans] ref|NP_498393.1| Ribosomal Protein, Small subunit family member (rps-13) [Caenorhabditis elegans] sp|P51404|RS13_CAEEL 40S ribosomal protein S13 6.0E-21
blast P62300 40S ribosomal protein S13 (40S ribosomal protein S15) sp|P62299|RS13_BRUPA 40S ribosomal protein S13 (17.4K protein) emb|CAA34603.1| unnamed protein product [Brugia pahangi] gb|AAA51420.1| ribosomal protein S13 gb|AAA30343.1| ribosomal protein S13 9.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000589 EMBL-EBI Ribosomal protein S15 7.3E-10
Pfam IPR000589 EMBL-EBI Ribosomal protein S15 2.6E-9
Sequence
Target Sequence 
>C. ELEGANS:174109_AT
cttcgtgcatcccaaatctgagttatcttcagggattaccacgaagttggtcaagtccgc
ggtctcaccgttcaaaccaaaatcatcatctcaaattgctcaaatagtgctggatgagca
gagctgggattctgggagctggagtacttcgagcatcgagaatcacatgttgaggttgct
gccgtcagagacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCGTGCATCCCAAATCTGAGTTA 70 221 65 Antisense
GAGTTATCTTCAGGGATTACCACGA 593 397 84 Antisense
CCACGAAGTTGGTCAAGTCCGCGGT 405 261 103 Antisense
GGTCTCACCGTTCAAACCAAAATCA 200 501 125 Antisense
AAAATCATCATCTCAAATTGCTCAA 565 133 143 Antisense
GCTGGATGAGCAGAGCTGGGATTCT 251 295 173 Antisense
GGGATTCTGGGAGCTGGAGTACTTC 673 495 190 Antisense
GGAGCTGGAGTACTTCGAGCATCGA 509 521 199 Antisense
GTACTTCGAGCATCGAGAATCACAT 83 461 208 Antisense
GAATCACATGTTGAGGTTGCTGCCG 523 327 224 Antisense
TGAGGTTGCTGCCGTCAGAGACTTC 456 567 235 Antisense
Sequence Source Affymetrix Proprietary Database