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[174107_at]

Description CEK070E2F /REP_DB=TREMBL Accession /GB=D69489 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70e2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 51      6grp_total > 09      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 494
(0.7)
P 		590.1
(3)
P 		334.5
(-3)
P 		418.3
(-1)
P 		256
B 527.9
(3)
P 		489.2
(0.5)
P 		435
(-3)
P 		497.7
(1)
P 		93
C 588.8
(3)
P 		471.3
(-1.2)
P 		419.4
(-3)
P 		582.2
(2.8)
P 		169
avr 536.9
(3) 		516.9
(2.1) 		396.3
(-3) 		499.4
(1.4) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 710.4
(3)
P 		524.2
(-0.4)
P 		454.3
(-1.7)
P 		468
(-1.4)
P 		540.3
(-0.1)
P 		381.4
(-3)
P 		329
B 555.6
(0.5)
P 		556.7
(0.6)
P 		597.1
(2.1)
P 		620.7
(3)
P 		535.8
(-0.2)
P 		463.4
(-3)
P 		157
C 686.8
(3)
P 		534.9
(0.2)
P 		359.4
(-3)
P 		610.7
(1.6)
P 		547.9
(0.5)
P 		390.1
(-2.4)
P 		327
avr 650.9
(3) 		538.6
(0.2) 		470.3
(-1.5) 		566.5
(0.9) 		541.3
(0.3) 		411.6
(-3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 179.9
(3)
P 		128.1
(0.4)
P 		87.5
(-1.7)
P 		61.2
(-3)
P 		119
B 168.3
(3)
P 		120.8
(-1.2)
P 		100.8
(-3)
P 		106.1
(-2.5)
P 		68
C 194.9
(3)
P 		135.5
(-0.7)
P 		146.2
(-0)
P 		98.2
(-3)
P 		97
avr 181
(3) 		128.1
(-0.4) 		111.5
(-1.5) 		88.5
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 131
(-0.6)
P 		186.4
(3)
P 		98.9
(-2.6)
P 		118.7
(-1.3)
P 		163
(1.5)
P 		92.9
(-3)
P 		94
B 193.3
(1)
P 		185.3
(0.3)
P 		145
(-3)
P 		164.4
(-1.4)
P 		217.7
(3)
P 		172.8
(-0.7)
P 		73
C 254.6
(3)
P 		163.2
(-0.4)
P 		91.5
(-3)
P 		122.8
(-1.8)
P 		177.3
(0.2)
P 		130.6
(-1.6)
P 		163
avr 193
(3) 		178.3
(1.9) 		111.8
(-3) 		135.3
(-1.3) 		186
(2.5) 		132.1
(-1.5) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20456
Sequence Type Exemplar sequence
Representative Public ID CEK070E2F NCBI
Target Description CEK070E2F /REP_DB=TREMBL Accession /GB=D69489 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70e2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058311 NCBI Caenorhabditis elegans C53D5.1a (C53D5.1) mRNA, complete cds. 11/11 None
C53D5.1a ENSEMBL cdna:known chromosome:CEL140:I:291216:305461:1 gene:C53D5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171618 3 1 NM_058311 174107_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:305099-305390(+) 90.38 100.0
Public Domain and Genome References
Ensembl C53D5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68264 Hypothetical protein C53D5.1a [Caenorhabditis elegans] ref|NP_490712.1| C53D5.1a [Caenorhabditis elegans] 0.0
blast AAK68265 Hypothetical protein C53D5.1b [Caenorhabditis elegans] ref|NP_490713.1| C53D5.1b [Caenorhabditis elegans] 0.0
blast AAN84836 Hypothetical protein C53D5.1c [Caenorhabditis elegans] ref|NP_871874.1| C53D5.1c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490712.1 1 61-80
C53D5.1a 1 61-80
Sequence
Target Sequence 
>C. ELEGANS:174107_AT
ttttttcttctactccatgtgtcaaaaaatccccgtgtcttataattttctggtgctttt
ttccatattttcctttttttgtgttctggctcatttttccatggctcacagagcccgaaa
gcttaggattttgaaattttattcgtttttttctcataattctgtcatcattttttgctc
tgcatcatcatcatcatcgtcaacatcatcgcgttttattatgggttcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTCTTCTACTCCATGTGTCAA 635 675 20 Antisense
CCATGTGTCAAAAAATCCCCGTGTC 268 265 34 Antisense
ATCCCCGTGTCTTATAATTTTCTGG 296 39 48 Antisense
ATTTTCTGGTGCTTTTTTCCATATT 266 15 64 Antisense
TTCTGGCTCATTTTTCCATGGCTCA 280 695 103 Antisense
GGCTCACAGAGCCCGAAAGCTTAGG 238 537 122 Antisense
GTTTTTTTCTCATAATTCTGTCATC 355 449 164 Antisense
TTCTGTCATCATTTTTTGCTCTGCA 146 695 179 Antisense
TCATTTTTTGCTCTGCATCATCATC 20 621 187 Antisense
TCGTCAACATCATCGCGTTTTATTA 175 603 216 Antisense
ATCGCGTTTTATTATGGGTTCATGT 571 37 227 Antisense
Sequence Source Affymetrix Proprietary Database