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[174106_s_at]

Description C66814 /REP_DB=TREMBL Accession /GB=C66814 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233b9 : 5prime end, single read.
Cluster 6grp_total > 67      4grp_total > 59      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 30.9
(-1)
A 		56.4
(1.8)
A 		67.7
(3)
A 		12
(-3)
A 		56
B 49.2
(2.9)
A 		49.5
(3)
A 		30.4
(-3)
A 		39.7
(-0.1)
A 		19
C 38.2
(0.9)
A 		52.9
(3)
A 		53.1
(3)
A 		10.5
(-3)
A 		43
avr 39.4
(0.5) 		52.9
(3) 		50.4
(2.5) 		20.7
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 69.7
(-0.7)
A 		68.7
(-0.7)
A 		47.2
(-2.7)
A 		47.5
(-2.6)
A 		43.6
(-3)
A 		110.4
(3)
A 		67
B 73
(3)
A 		27.8
(-3)
A 		57.8
(1)
A 		56.2
(0.8)
A 		36.7
(-1.8)
A 		49.3
(-0.1)
A 		45
C 19.8
(-3)
A 		54.5
(1.9)
A 		60.3
(2.7)
A 		37.4
(-0.5)
A 		62.2
(3)
A 		43.9
(0.4)
A 		42
avr 54.2
(-0.9) 		50.3
(-2.1) 		55.1
(-0.7) 		47
(-3) 		47.5
(-2.9) 		67.9
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.3
(0.6)
A 		12.3
(1)
A 		17.7
(3)
A 		1.8
(-3)
A 		16
B 15.7
(3)
A 		12.2
(0.6)
A 		7
(-3)
A 		8.5
(-2)
A 		9
C 12.6
(0.9)
A 		15.2
(1.8)
A 		18.5
(3)
A 		1.8
(-3)
A 		17
avr 13.2
(2.3) 		13.2
(2.3) 		14.4
(3) 		4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.9
(-2.1)
A 		24.4
(2.1)
A 		10.3
(-3)
A 		12.1
(-2.3)
A 		13.2
(-2)
A 		26.9
(3)
A 		17
B 25.4
(3)
A 		9.3
(-3)
A 		14
(-1.2)
A 		14.9
(-0.9)
A 		14.9
(-0.9)
A 		18.4
(0.4)
A 		16
C 7.3
(-3)
A 		16.6
(1.4)
A 		15.4
(0.8)
A 		7.5
(-2.9)
A 		20.1
(3)
A 		14.7
(0.5)
A 		13
avr 15.2
(-0.4) 		16.8
(0.7) 		13.2
(-1.8) 		11.5
(-3) 		16.1
(0.2) 		20
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174106_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21609
Sequence Type Exemplar sequence
Representative Public ID C66814 NCBI
Target Description C66814 /REP_DB=TREMBL Accession /GB=C66814 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028271(11), NM_001028272(11), NM_001028273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028271 NCBI Caenorhabditis elegans Y37E11B.10a (Y37E11B.10) mRNA, complete cds. 11/11 None
NM_001028272 NCBI Caenorhabditis elegans Y37E11B.10b (Y37E11B.10) mRNA, complete cds. 11/11 None
NM_001028273 NCBI Caenorhabditis elegans Y37E11B.10c (Y37E11B.10) mRNA, complete cds. 11/11 None
SNAP00000026349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3603575:3613066:-1 11/11 None
GENEFINDER00000026354 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3603575:3605637:-1 11/11 None
Y37E11B.10a ENSEMBL cdna:known chromosome:CEL140:IV:3603544:3605637:-1 gene:Y37E11B.10 11/11 A 
Y37E11B.10b ENSEMBL cdna:known chromosome:CEL140:IV:3603575:3606461:-1 gene:Y37E11B.10 11/11 A 
Y37E11B.10c ENSEMBL cdna:known chromosome:CEL140:IV:3604927:3605689:-1 gene:Y37E11B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3605039-3605457(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37E11B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12819 Hypothetical protein Y37E11B.10a [Caenorhabditis elegans] ref|NP_001023442.1| Y37E11B.10a [Caenorhabditis elegans] 0.0
blast AAP13763 Hypothetical protein Y37E11B.10b [Caenorhabditis elegans] ref|NP_001023443.1| Y37E11B.10b [Caenorhabditis elegans] 0.0
blast NP_500385 ZC416.6 [Caenorhabditis elegans] gb|AAB88369.2| Hypothetical protein ZC416.6 [Caenorhabditis elegans] 0.0
blast CAE63765 Hypothetical protein CBG08301 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.7E-109
Sequence
Target Sequence 
>C. ELEGANS:174106_S_AT
caactcggtcaacactgcgattggtggaactccatccgactttgagtcgaactccgggct
atctgacacctcggcaggatcgggccgcgccaactcggccgtttccgagacgaccacagc
aatgtcggcgacgtctccggagattattatgaatgatcttcgaaaaggaagcctgtttgg
ccgacagaaagggagtctggctaccacggatggagggccccagagtgttactatcattac
tttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCGGTCAACACTGCGATTGGT 178 187 17 Antisense
CACTGCGATTGGTGGAACTCCATCC 83 199 29 Antisense
GTGGAACTCCATCCGACTTTGAGTC 40 491 40 Antisense
TTTCCGAGACGACCACAGCAATGTC 521 669 118 Antisense
ACCACAGCAATGTCGGCGACGTCTC 367 85 129 Antisense
TCGGCGACGTCTCCGGAGATTATTA 411 605 141 Antisense
GGAAGCCTGTTTGGCCGACAGAAAG 258 531 183 Antisense
GAAAGGGAGTCTGGCTACCACGGAT 408 359 203 Antisense
TGGCTACCACGGATGGAGGGCCCCA 107 505 214 Antisense
ATGGAGGGCCCCAGAGTGTTACTAT 311 25 226 Antisense
CAGAGTGTTACTATCATTACTTTCT 414 205 237 Antisense
Sequence Source Affymetrix Proprietary Database