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[174103_at]

Description C42145 /REP_DB=TREMBL Accession /GB=C42145 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk289e8 : 5prime end, single read.
Cluster 4grp_high_8_8 > 04      6grp_total > 48      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 97.9
(-0)
P 		96.4
(-0.1)
P 		31.2
(-3)
A 		166.3
(3)
P 		135
B 72.4
(-1)
P 		58.5
(-1.6)
P 		27.5
(-3)
A 		164.2
(3)
P 		137
C 111.7
(-0.1)
P 		56
(-3)
P 		70.9
(-2.2)
P 		170.1
(3)
P 		114
avr 94
(-0.5) 		70.3
(-1.7) 		43.2
(-3) 		166.9
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 110.3
(3)
P 		36.8
(-3)
A 		48.9
(-2)
P 		36.3
(-3)
A 		67.4
(-0.5)
P 		93.9
(1.7)
P 		74
B 162.2
(3)
P 		71.8
(-1.1)
P 		31.5
(-2.9)
P 		30.1
(-3)
A 		40.8
(-2.5)
P 		139.7
(2)
P 		132
C 101.6
(2.8)
P 		68
(0.6)
P 		30.3
(-1.9)
A 		53.4
(-0.4)
A 		14.5
(-3)
A 		104.2
(3)
P 		90
avr 124.7
(3) 		58.9
(-1.5) 		36.9
(-3) 		39.9
(-2.8) 		40.9
(-2.7) 		112.6
(2.2) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 35.6
(3)
P 		20.9
(-0.2)
P 		8.1
(-3)
A 		24.3
(0.5)
P 		28
B 23.1
(0.5)
P 		14.5
(-1.3)
P 		6.4
(-3)
A 		35
(3)
P 		29
C 37
(3)
P 		16.1
(-3)
P 		24.7
(-0.5)
P 		28.7
(0.6)
P 		21
avr 31.9
(3) 		17.2
(-1.7) 		13.1
(-3) 		29.3
(2.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 20.3
(1.9)
P 		13.1
(-1.3)
A 		10.7
(-2.3)
P 		9.2
(-3)
A 		20.3
(1.9)
P 		22.9
(3)
P 		14
B 56.4
(3)
P 		23.9
(-1)
P 		7.6
(-3)
P 		8
(-3)
A 		16.6
(-1.9)
P 		52.1
(2.5)
P 		49
C 37.7
(3)
P 		20.7
(-0.1)
P 		7.7
(-2.5)
A 		10.7
(-1.9)
A 		4.7
(-3)
A 		34.9
(2.5)
P 		33
avr 38.1
(3) 		19.2
(-0.9) 		8.7
(-3) 		9.3
(-2.9) 		13.9
(-1.9) 		36.6
(2.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22392
Sequence Type Exemplar sequence
Representative Public ID C42145 NCBI
Target Description C42145 /REP_DB=TREMBL Accession /GB=C42145 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk289e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029770 NCBI Caenorhabditis elegans W05H7.4d (W05H7.4) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043342 1/11 Cross Hyb Matching Probes None
W05H7.4b 1/11 Cross Hyb Matching Probes A 
W05H7.4d 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180479 5 1 NM_001029770 174103_at (11)
NM_001029771 183085_at (11)
NM_171627 183085_at (11)
NM_171628 183085_at (11)
NM_171629 183398_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1446330-1446628(-) 98.35 98.35
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024941 W05H7.4d [Caenorhabditis elegans] gb|AAO91680.1| Hypothetical protein W05H7.4d [Caenorhabditis elegans] 4.0E-15
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 2.0E-9
blast NP_741721 W05H7.4c [Caenorhabditis elegans] gb|AAX55683.1| Hypothetical protein W05H7.4c [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:174103_AT
agcagaagcagcagaagccgccagcagctcaactccgcaccaacaccgtctccaatggcc
gacgtctacaccccgaccaagacaatggacggcgccttcctgccagcagtgggatccccg
aacacctccatcgactctccgggtaagtcatcggaattctactatttttgaatttgaatt
ctaatttgcaagttccttattttcttctccacttcatcctatttcttcgatctcgaatct
tgatatcaagcactttcatttttctttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAAGCAGCAGAAGCCGCCAGC 393 75 16 Antisense
CCATCGACTCTCCGGGTAAGTCATC 645 259 143 Antisense
TCGACTCTCCGGGTAAGTCATCGGA 41 597 146 Antisense
CTCTCCGGGTAAGTCATCGGAATTC 354 227 150 Antisense
TGAATTCTAATTTGCAAGTTCCTTA 166 567 190 Antisense
TTCATCCTATTTCTTCGATCTCGAA 215 689 228 Antisense
CATCCTATTTCTTCGATCTCGAATC 354 211 230 Antisense
CTTCGATCTCGAATCTTGATATCAA 597 219 240 Antisense
TCGATCTCGAATCTTGATATCAAGC 480 603 242 Antisense
GATATCAAGCACTTTCATTTTTCTT 205 427 257 Antisense
TCAAGCACTTTCATTTTTCTTTGTG 691 631 261 Antisense
Sequence Source Affymetrix Proprietary Database