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[174102_at]

Description C70896 /REP_DB=TREMBL Accession /GB=C70896 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437d1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      6grp_highest_nonorm > 72      6grp_total > 54      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 361.8
(3)
P 		224.5
(-0.4)
P 		296
(1.4)
P 		121.7
(-3)
A 		240
B 347.8
(3)
P 		276.6
(1.5)
P 		302.4
(2)
P 		72
(-3)
A 		276
C 332.6
(3)
P 		314.2
(2.5)
P 		273
(1.5)
P 		99.1
(-3)
A 		234
avr 347.4
(3) 		271.8
(1.2) 		290.5
(1.6) 		97.6
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 403.5
(-1.3)
P 		342.7
(-2.6)
P 		615.1
(3)
P 		421.4
(-1)
P 		322.7
(-3)
P 		413.2
(-1.1)
P 		292
B 308.5
(-3)
P 		346.8
(-2.3)
P 		627
(3)
P 		310.8
(-3)
P 		387.1
(-1.5)
P 		401.1
(-1.3)
P 		319
C 275.9
(-3)
P 		324.4
(-1.7)
P 		473.3
(2.2)
P 		425.6
(1)
P 		398.3
(0.2)
P 		502.2
(3)
P 		226
avr 329.3
(-3) 		338
(-2.8) 		571.8
(3) 		385.9
(-1.6) 		369.4
(-2) 		438.8
(-0.3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 131.7
(3)
P 		48.7
(-1.4)
P 		77.4
(0.1)
P 		17.8
(-3)
A 		114
B 110.9
(3)
P 		68.3
(0.3)
P 		70.1
(0.4)
P 		15.3
(-3)
A 		96
C 110.1
(3)
P 		90.3
(1.7)
P 		95.2
(2)
P 		16.7
(-3)
A 		93
avr 117.6
(3) 		69.1
(0.1) 		80.9
(0.8) 		16.6
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 74.4
(-3)
P 		121.9
(1.8)
P 		133.9
(3)
P 		106.9
(0.3)
P 		97.4
(-0.7)
P 		100.6
(-0.4)
P 		60
B 107.3
(-1)
P 		115.4
(-0.4)
P 		152.3
(2.6)
P 		82.3
(-3)
P 		157.3
(3)
P 		149.6
(2.4)
P 		75
C 102.3
(-1.8)
P 		99
(-2)
P 		120.5
(-0.5)
P 		85.6
(-3)
P 		128.9
(0.1)
P 		168.1
(3)
P 		83
avr 94.7
(-2.6) 		112.1
(-0.4) 		135.6
(2.5) 		91.6
(-3) 		127.9
(1.6) 		139.4
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21582
Sequence Type Exemplar sequence
Representative Public ID C70896 NCBI
Target Description C70896 /REP_DB=TREMBL Accession /GB=C70896 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437d1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036487 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2838703:2839312:1 11/11 None
GENEFINDER00000036605 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2838703:2839312:1 11/11 None
Y54G2A.8b ENSEMBL cdna:known chromosome:CEL140:IV:2835711:2839415:1 gene:Y54G2A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2839066-2839359(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 0.0
blast AAK68532 Hypothetical protein Y54G2A.8a [Caenorhabditis elegans] ref|NP_001023507.1| Y54G2A.8a [Caenorhabditis elegans] 0.0
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 1.0E-109
blast AAK68532 Hypothetical protein Y54G2A.8a [Caenorhabditis elegans] ref|NP_001023507.1| Y54G2A.8a [Caenorhabditis elegans] 1.0E-49
blast AAL32255 Hypothetical protein Y54G2A.33 [Caenorhabditis elegans] ref|NP_741349.1| Y54G2A.33 [Caenorhabditis elegans] 4.0E-49
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 3.0E-48
blast AAK68532 Hypothetical protein Y54G2A.8a [Caenorhabditis elegans] ref|NP_001023507.1| Y54G2A.8a [Caenorhabditis elegans] 7.0E-44
blast AAL32255 Hypothetical protein Y54G2A.33 [Caenorhabditis elegans] ref|NP_741349.1| Y54G2A.33 [Caenorhabditis elegans] 2.0E-43
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 3.0E-43
Sequence
Target Sequence 
>C. ELEGANS:174102_AT
gaaaattctggatcggcttgtcccgaaagtcatccactagtccttggtcatgggacaacg
gaattcccctgcaatggacaaatttcgcggcacctctgggacaaaactacgtagcgcaga
gcatggtcaacacaaaatggagcacgtacacgggcactgacaagaatttctttgcgtgca
gctatgacccagatggtgttcttgcgacgactacacaggaagttccaacgactacaggtg
ctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTCTGGATCGGCTTGTCCCG 278 353 17 Antisense
TCGGCTTGTCCCGAAAGTCATCCAC 113 607 29 Antisense
AAGTCATCCACTAGTCCTTGGTCAT 652 157 43 Antisense
TGGGACAACGGAATTCCCCTGCAAT 399 553 67 Antisense
GCAATGGACAAATTTCGCGGCACCT 679 319 87 Antisense
GCACCTCTGGGACAAAACTACGTAG 517 291 106 Antisense
GTAGCGCAGAGCATGGTCAACACAA 374 457 127 Antisense
AATGGAGCACGTACACGGGCACTGA 255 163 152 Antisense
TTTGCGTGCAGCTATGACCCAGATG 310 617 187 Antisense
CAGATGGTGTTCTTGCGACGACTAC 279 205 206 Antisense
AGTTCCAACGACTACAGGTGCTGCA 70 63 237 Antisense
Sequence Source Affymetrix Proprietary Database