[Home] | [Total List]

[174101_at]

Description C67899 /REP_DB=TREMBL Accession /GB=C67899 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk263f10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 29      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 275.6
(3)
P 		210.5
(0.9)
P 		89.8
(-3)
A 		113.4
(-2.2)
P 		186
B 326.8
(3)
P 		111.1
(-2)
P 		66.3
(-3)
M 		140.7
(-1.3)
P 		261
C 312.4
(3)
P 		201.5
(-0.2)
P 		105.4
(-3)
P 		166.9
(-1.2)
P 		207
avr 304.9
(3) 		174.4
(-0.6) 		87.2
(-3) 		140.3
(-1.5) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 283.6
(3)
P 		150.6
(-1.9)
P 		139.8
(-2.3)
P 		119.4
(-3)
P 		200.6
(-0)
P 		176.3
(-0.9)
P 		164
B 364.4
(3)
P 		211.2
(-0.4)
P 		91.2
(-3)
P 		149.8
(-1.7)
P 		242.2
(0.3)
P 		213.6
(-0.3)
P 		273
C 317.3
(3)
P 		138.4
(-3)
P 		165.4
(-2.1)
P 		156.9
(-2.4)
P 		280.2
(1.8)
P 		189
(-1.3)
P 		179
avr 321.8
(3) 		166.7
(-1.9) 		132.1
(-3) 		142
(-2.7) 		241
(0.4) 		193
(-1.1) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 100.3
(3)
P 		45.7
(-0.9)
P 		23.5
(-2.5)
A 		16.6
(-3)
P 		84
B 104.2
(3)
P 		27.4
(-2.2)
P 		15.4
(-3)
M 		30
(-2)
P 		89
C 103.4
(3)
P 		57.9
(-0.6)
P 		36.7
(-2.3)
P 		28.2
(-3)
P 		75
avr 102.6
(3) 		43.7
(-1.5) 		25.2
(-3) 		24.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 52.3
(1.4)
P 		53.6
(1.6)
P 		30.4
(-3)
P 		30.3
(-3)
P 		60.5
(3)
P 		42.9
(-0.5)
P 		30
B 126.8
(3)
P 		70.3
(-0.2)
P 		22.2
(-3)
P 		39.7
(-2)
P 		98.4
(1.4)
P 		79.7
(0.3)
P 		105
C 117.6
(3)
P 		42.2
(-2.3)
P 		42.1
(-2.3)
P 		31.6
(-3)
P 		90.7
(1.1)
P 		63.3
(-0.8)
P 		86
avr 98.9
(3) 		55.4
(-0.9) 		31.6
(-3) 		33.9
(-2.8) 		83.2
(1.6) 		62
(-0.3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20178
Sequence Type Exemplar sequence
Representative Public ID C67899 NCBI
Target Description C67899 /REP_DB=TREMBL Accession /GB=C67899 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk263f10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060576 NCBI Caenorhabditis elegans T22H2.5a (T22H2.5) mRNA, complete cds. 11/11 None
T22H2.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:11696384:11698954:-1 gene:T22H2.5 11/11 None
T22H2.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:11696384:11698952:-1 gene:T22H2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060575 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038048 5/11 Cross Hyb Matching Probes None
T22H2.5b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173053 2 1 NM_060576 174101_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11696805-11697149(-) 100.0 100.0
Public Domain and Genome References
Ensembl T22H2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04755 Hypothetical protein T22H2.5a [Caenorhabditis elegans] ref|NP_492977.2| T22H2.5a [Caenorhabditis elegans] 1.0E-144
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 1.0E-144
blast CAE69585 Hypothetical protein CBG15804 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174101_AT
ttgctttacatttttgctgtgtttttcggtgattagagcataatttggagcctattacag
ttcttcttaaaggtacagcaagctccgcatgctgctgccccgatggttgtgattgcaatt
gtgactgtaattgttaaaagccaacttttttaaaaacgtttttcttattattccaacgca
ttcttccaatatatgtatgacgtcactttccttcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTTTACATTTTTGCTGTGTTTT 98 703 28 Antisense
ATTTTTGCTGTGTTTTTCGGTGATT 538 15 37 Antisense
GTGTTTTTCGGTGATTAGAGCATAA 167 485 46 Antisense
GAGCATAATTTGGAGCCTATTACAG 231 389 63 Antisense
TACAGTTCTTCTTAAAGGTACAGCA 530 641 83 Antisense
TACAGCAAGCTCCGCATGCTGCTGC 120 643 101 Antisense
TGCTGCCCCGATGGTTGTGATTGCA 650 581 120 Antisense
TTTTTCTTATTATTCCAACGCATTC 474 675 186 Antisense
ATTCCAACGCATTCTTCCAATATAT 631 7 197 Antisense
GCATTCTTCCAATATATGTATGACG 5 309 205 Antisense
TGTATGACGTCACTTTCCTTCAGAC 239 561 221 Antisense
Sequence Source Affymetrix Proprietary Database