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[174100_at]

Description C44181 /REP_DB=TREMBL Accession /GB=C44181 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk340g12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 40      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 55      6grp_total > 52      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 721
1 2 3 4 range
A 1446.7
(0.6)
P 		1677.9
(3)
P 		1578.9
(2)
P 		1099.6
(-3)
P 		578
B 1337.5
(-1.6)
P 		1189
(-3)
P 		1820.8
(3)
P 		1266
(-2.3)
P 		632
C 1328
(-2.8)
P 		1319.3
(-3)
P 		1581
(3)
P 		1331.1
(-2.7)
P 		262
avr 1370.7
(-1.1) 		1395.4
(-0.7) 		1660.2
(3) 		1232.2
(-3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1374
1 2 3 4 5 6 range
A 1521.2
(-1.6)
P 		1419.5
(-2.1)
P 		2570.9
(3)
P 		1843.4
(-0.2)
P 		1392.3
(-2.2)
P 		1212.7
(-3)
P 		1358
B 1572.8
(-3)
P 		1759
(-1.9)
P 		2586.6
(3)
P 		1637.5
(-2.6)
P 		1587.1
(-2.9)
P 		1588.6
(-2.9)
P 		1014
C 1684.7
(-0.6)
P 		1663.6
(-0.9)
P 		1494.5
(-3)
P 		1969.7
(3)
P 		1624.2
(-1.4)
P 		1697.8
(-0.4)
P 		475
avr 1592.9
(-2.2) 		1614
(-2) 		2217.3
(3) 		1816.9
(-0.3) 		1534.5
(-2.7) 		1499.7
(-3) 		718
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 526.7
(3)
P 		364.2
(0.3)
P 		412.8
(1.1)
P 		161
(-3)
P 		366
B 426.5
(3)
P 		293.7
(-2.1)
P 		421.9
(2.8)
P 		269.8
(-3)
P 		157
C 439.6
(1)
P 		379.3
(-0.2)
P 		551
(3)
P 		224.4
(-3)
P 		327
avr 464.3
(3) 		345.7
(0.1) 		461.9
(2.9) 		218.4
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 280.4
(-3)
P 		504.8
(1.8)
P 		559.9
(3)
P 		467.5
(1)
P 		420.2
(0)
P 		295.3
(-2.7)
P 		280
B 547.3
(0.2)
P 		585.5
(1.3)
P 		628.1
(2.5)
P 		433.7
(-3)
P 		644.8
(3)
P 		592.4
(1.5)
P 		211
C 624.4
(3)
P 		507.6
(0.1)
P 		380.4
(-3)
P 		396.1
(-2.6)
P 		525.6
(0.6)
P 		568.4
(1.6)
P 		244
avr 484
(0.1) 		532.6
(3) 		522.8
(2.4) 		432.4
(-3) 		530.2
(2.9) 		485.4
(0.2) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21157
Sequence Type Exemplar sequence
Representative Public ID C44181 NCBI
Target Description C44181 /REP_DB=TREMBL Accession /GB=C44181 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk340g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066560 NCBI Caenorhabditis elegans ZK637.2 (ZK637.2) mRNA, complete cds. 11/11 A 
ZK637.2.2 ENSEMBL cdna:known chromosome:CEL140:III:8887652:8890045:1 gene:ZK637.2 11/11 None
ZK637.2.1 ENSEMBL cdna:known chromosome:CEL140:III:8887654:8890051:1 gene:ZK637.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013230 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8888025-8889967(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK637.2
Entrez Gene 176252 Entrez gene
SwissProt P30629 EMBL-EBI
WormBase CE32292 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5969.1.S1_S_AT similar to CG5323-PA cfa
DROSOPHILA_2:1630750_AT dm
DROSGENOME1:147448_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA77449 Hypothetical protein ZK637.2 [Caenorhabditis elegans] ref|NP_498961.2| ZK637.2 [Caenorhabditis elegans] sp|P30629|YOU2_CAEEL Hypothetical protein ZK637.2 in chromosome III 3.0E-79
blast CAE57610 Hypothetical protein CBG00591 [Caenorhabditis briggsae] 4.0E-53
blast AAF57670 CG5323-PA [Drosophila melanogaster] gb|AAM50726.1| GM25382p [Drosophila melanogaster] ref|NP_611346.1| CG5323-PA [Drosophila melanogaster] 5.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR008560 EMBL-EBI Eukaryotic protein of unknown function DUF842 6.3E-34
Sequence
Target Sequence 
>C. ELEGANS:174100_AT
aatcacagaagctcagtttcaacgagaagctcgattcgtgtgtctctgtttgtgctgatg
atcacatcaaattaattccggcaatcaagaagagattcgcgaaaaatacctgagagccag
ccacacattttccaccgagtattgccatatcccctcttaatttcccatttatcaaaaaaa
tatcccatttaggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACAGAAGCTCAGTTTCAACGA 122 171 77 Antisense
GCTCAGTTTCAACGAGAAGCTCGAT 381 299 87 Antisense
AGAAGCTCGATTCGTGTGTCTCTGT 101 75 101 Antisense
CTGTTTGTGCTGATGATCACATCAA 296 239 122 Antisense
GATCACATCAAATTAATTCCGGCAA 634 421 136 Antisense
TTAATTCCGGCAATCAAGAAGAGAT 48 679 148 Antisense
GATTCGCGAAAAATACCTGAGAGCC 294 433 170 Antisense
AATACCTGAGAGCCAGCCACACATT 424 173 181 Antisense
ACATTTTCCACCGAGTATTGCCATA 565 105 201 Antisense
ATTTTCCACCGAGTATTGCCATATC 25 15 203 Antisense
TCAAAAAAATATCCCATTTAGGCGT 61 605 248 Antisense
Sequence Source Affymetrix Proprietary Database