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[174099_s_at]

Description CEC9431 /REP_DB=TREMBL Accession /GB=C08943 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142d5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 66      6grp_total > 74      4grp_total > 57      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1539
1 2 3 4 range
A 1149.8
(-1.7)
P 		1888.8
(1.2)
P 		2332.1
(3)
P 		831.2
(-3)
P 		1501
B 1143.3
(-1.5)
P 		1780.1
(2)
P 		1964.1
(3)
P 		861.4
(-3)
P 		1103
C 1081.9
(-1.3)
P 		1686.8
(2.1)
P 		1838.7
(3)
P 		793.3
(-3)
P 		1045
avr 1125
(-1.5) 		1785.2
(1.7) 		2045
(3) 		828.6
(-3) 		1216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1103
1 2 3 4 5 6 range
A 920.9
(-3)
P 		1430.5
(-0.2)
P 		1202.9
(-1.5)
P 		2023.7
(3)
P 		1336.9
(-0.7)
P 		1476.9
(0)
P 		1103
B 1168.2
(-3)
P 		1258.7
(-1.9)
P 		1544.9
(1.4)
P 		1328.6
(-1.1)
P 		1655.2
(2.7)
P 		1682.5
(3)
P 		514
C 1381.8
(0.2)
P 		1064.3
(-3)
P 		1627.8
(2.6)
P 		1231.9
(-1.3)
P 		1663.2
(3)
P 		1420.2
(0.6)
P 		599
avr 1157
(-3) 		1251.2
(-1.6) 		1458.5
(1.6) 		1528.1
(2.6) 		1551.8
(3) 		1526.5
(2.6) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 418.6
(0.7)
P 		410
(0.5)
P 		609.7
(3)
P 		121.7
(-3)
P 		488
B 364.6
(1)
P 		439.7
(2.7)
P 		455.1
(3)
P 		183.6
(-3)
P 		272
C 358.1
(-0.3)
P 		485
(1.2)
P 		640.8
(3)
P 		133.8
(-3)
P 		507
avr 380.4
(0.3) 		444.9
(1.2) 		568.5
(3) 		146.4
(-3) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 169.8
(-3)
P 		508.7
(2.9)
P 		262
(-1.4)
P 		513.2
(3)
P 		403.4
(1.1)
P 		359.6
(0.3)
P 		343
B 406.5
(-2)
P 		419
(-1.7)
P 		375.2
(-2.6)
P 		351.9
(-3)
P 		672.5
(3)
P 		627.4
(2.2)
P 		321
C 512.2
(2.5)
P 		324.7
(-1.4)
P 		414.3
(0.4)
P 		247.7
(-3)
P 		538.2
(3)
P 		475.4
(1.7)
P 		291
avr 362.8
(-2.6) 		417.5
(-0.9) 		350.5
(-3) 		370.9
(-2.3) 		538
(3) 		487.5
(1.4) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174099_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20084
Sequence Type Exemplar sequence
Representative Public ID CEC9431 NCBI
Target Description CEC9431 /REP_DB=TREMBL Accession /GB=C08943 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058558 NCBI Caenorhabditis elegans Y39G10AR.20 (Y39G10AR.20) mRNA, complete cds. 11/11 None
SNAP00000028454 ENSEMBL cdna:SNAP chromosome:CEL140:I:2312511:2312897:1 11/11 None
GENEFINDER00000028492 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2312511:2315761:1 11/11 None
Y39G10AR.20.2 ENSEMBL cdna:known chromosome:CEL140:I:2312495:2313009:1 gene:Y39G10AR.20 11/11 None
Y39G10AR.20.1 ENSEMBL cdna:known chromosome:CEL140:I:2312497:2312931:1 gene:Y39G10AR.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2312548-2312914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AR.20
Entrez Gene 171791 Entrez gene
SwissProt Q95XR1 EMBL-EBI
WormBase CE28980 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7022 chaperonin-mediated tubulin folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490960 Y39G10AR.8 [Caenorhabditis elegans] gb|AAK39619.1| Hypothetical protein Y39G10AR.8 [Caenorhabditis elegans] 0.0
blast CAE60299 Hypothetical protein CBG03884 [Caenorhabditis briggsae] 0.0
blast XP_787081 PREDICTED: similar to eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa [Strongylocentrotus purpuratus] 0.0
blast NP_490959 Y39G10AR.20 [Caenorhabditis elegans] gb|AAK95887.1| Hypothetical protein Y39G10AR.20 [Caenorhabditis elegans] 2.0E-53
blast CAE60298 Hypothetical protein CBG03882 [Caenorhabditis briggsae] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR004226 EMBL-EBI Tubulin binding cofactor A 6.4E-13
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 6.4E-11
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 5.0E-34
Sequence
Target Sequence 
>C. ELEGANS:174099_S_AT
cgtctcgtcaaagaagtcgcctattacgagaagcaagttgtgaaggaggagcagaaggct
gcccaactcgccgccgacgccaccaacgaggacgaggagtatgttgccaagaagtcgaag
gatattgttaaggaaactgccaacatggtccgcgattctcaatcacgtctccaaaaagct
gtggccgacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTCGTCAAAGAAGTCGCCTATT 674 235 32 Antisense
GAAGTCGCCTATTACGAGAAGCAAG 402 333 44 Antisense
CGCCTATTACGAGAAGCAAGTTGTG 315 255 49 Antisense
GAGGAGCAGAAGGCTGCCCAACTCG 287 403 77 Antisense
GACGCCACCAACGAGGACGAGGAGT 29 381 107 Antisense
GAGGACGAGGAGTATGTTGCCAAGA 121 405 119 Antisense
GAGGAGTATGTTGCCAAGAAGTCGA 354 399 125 Antisense
GAAGTCGAAGGATATTGTTAAGGAA 163 313 142 Antisense
AAGGAAACTGCCAACATGGTCCGCG 107 159 161 Antisense
ATTCTCAATCACGTCTCCAAAAAGC 380 7 186 Antisense
GTCTCCAAAAAGCTGTGGCCGACCT 63 471 198 Antisense
Sequence Source Affymetrix Proprietary Database