[Home] | [Total List]

[174098_at]

Description C40720 /REP_DB=TREMBL Accession /GB=C40720 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247g11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 04      4grp_high_8_8 > 28      6grp_highest_nonorm > 94      6grp_total > 87      4grp_total > 35      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 238.9
(-2.9)
P 		308
(3)
P 		238
(-3)
P 		283.9
(0.9)
P 		70
B 251.8
(-3)
P 		358.9
(3)
P 		270.7
(-1.9)
P 		301.6
(-0.2)
P 		107
C 313.6
(3)
P 		307.2
(2.1)
P 		271.5
(-3)
P 		294.3
(0.2)
P 		42
avr 268.1
(-2.3) 		324.7
(3) 		260.1
(-3) 		293.3
(0.1) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1506
1 2 3 4 5 6 range
A 202.5
(-3)
P 		212
(-3)
P 		211.9
(-3)
P 		252
(-2.8)
P 		814.3
(-0.2)
P 		1519
(3)
P 		1317
B 232.3
(-2.5)
P 		127.1
(-3)
P 		214.7
(-2.6)
P 		318.5
(-2.2)
P 		745.4
(-0.3)
P 		1486.7
(3)
P 		1360
C 218.6
(-2.9)
P 		185.3
(-3)
P 		228.8
(-2.8)
P 		369.7
(-2.2)
P 		680.8
(-0.9)
P 		1633.1
(3)
P 		1448
avr 217.8
(-2.8) 		174.8
(-3) 		218.5
(-2.8) 		313.4
(-2.4) 		746.8
(-0.5) 		1546.3
(3) 		1372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 87
(3)
P 		66.9
(0.3)
P 		62.2
(-0.3)
P 		41.6
(-3)
P 		45
B 80.3
(1.1)
P 		88.6
(3)
P 		62.7
(-3)
P 		64.3
(-2.6)
P 		26
C 103.8
(3)
P 		88.3
(1.3)
P 		94.6
(2)
P 		49.6
(-3)
P 		54
avr 90.4
(3) 		81.3
(1.6) 		73.2
(0.3) 		51.8
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 37.3
(-3)
P 		75.4
(-2.3)
P 		46.1
(-2.8)
P 		63.9
(-2.5)
P 		245.7
(0.8)
P 		369.8
(3)
P 		333
B 80.8
(-2.5)
P 		42.3
(-3)
P 		52.1
(-2.9)
P 		84.4
(-2.5)
P 		302.8
(0.1)
P 		554.4
(3)
P 		512
C 81
(-2.7)
P 		56.5
(-3)
P 		58.2
(-3)
P 		74.3
(-2.8)
P 		220.3
(-1)
P 		546.7
(3)
P 		490
avr 66.4
(-2.8) 		58.1
(-2.9) 		52.1
(-3) 		74.2
(-2.7) 		256.3
(-0.2) 		490.3
(3) 		438
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20885
Sequence Type Exemplar sequence
Representative Public ID C40720 NCBI
Target Description C40720 /REP_DB=TREMBL Accession /GB=C40720 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247g11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066809 NCBI Caenorhabditis elegans K03H1.7 (K03H1.7) mRNA, complete cds. 11/11 None
K03H1.7 ENSEMBL cdna:known chromosome:CEL140:III:9947302:9947997:1 gene:K03H1.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019357 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9947703-9947983(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H1.7
Entrez Gene 176408 Entrez gene
SwissProt Q21196 EMBL-EBI
WormBase CE00573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82659 Hypothetical protein K03H1.7 [Caenorhabditis elegans] ref|NP_499210.1| K03H1.7 [Caenorhabditis elegans] 3.0E-33
blast CAE65081 Hypothetical protein CBG09939 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:174098_AT
aatcatgcatcataactgcctcggagattgatactcgttcttcattctgcaatctcgttg
ttccatgggtttcaattaataatatctcaattttcccctcaccttacgctttattccatt
ctcccattcaaaaagtgccgttttcaatgacttctcccgagtttcaaaagttccaaacaa
cggggcatcccatatcgacttatcactaatttctgtatcatgcccattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATGCATCATAACTGCCTCGGA 127 171 29 Antisense
GCATCATAACTGCCTCGGAGATTGA 557 309 35 Antisense
GGAGATTGATACTCGTTCTTCATTC 344 517 51 Antisense
CATTCTGCAATCTCGTTGTTCCATG 263 217 71 Antisense
ATCTCGTTGTTCCATGGGTTTCAAT 615 31 80 Antisense
CCATTCTCCCATTCAAAAAGTGCCG 538 269 144 Antisense
AAGTGCCGTTTTCAATGACTTCTCC 223 159 161 Antisense
CAATGACTTCTCCCGAGTTTCAAAA 98 173 173 Antisense
GTTCCAAACAACGGGGCATCCCATA 51 439 198 Antisense
CATCCCATATCGACTTATCACTAAT 673 211 214 Antisense
ACTAATTTCTGTATCATGCCCATTC 326 101 233 Antisense
Sequence Source Affymetrix Proprietary Database