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[174097_at]

Description C61156 /REP_DB=TREMBL Accession /GB=C61156 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 244.5
(1.4)
P 		139.7
(-1.9)
P 		104.6
(-3)
P 		294.6
(3)
P 		190
B 196.3
(1.9)
P 		168.5
(-0.3)
P 		135.7
(-3)
P 		209.8
(3)
P 		74
C 201.5
(-0.4)
P 		226.8
(0.3)
P 		108.2
(-3)
P 		323.8
(3)
P 		216
avr 214.1
(0.7) 		178.3
(-0.7) 		116.2
(-3) 		276.1
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 274.8
(3)
P 		137.1
(-1.6)
P 		110.2
(-2.5)
P 		96.3
(-3)
P 		192.7
(0.2)
P 		161.9
(-0.8)
P 		179
B 215.6
(3)
P 		131.8
(-1.1)
P 		92.8
(-3)
P 		185.2
(1.5)
P 		208.3
(2.6)
P 		207.9
(2.6)
P 		123
C 203.6
(3)
P 		89.7
(-3)
P 		108.5
(-2)
P 		119.2
(-1.4)
P 		145.1
(-0.1)
P 		190.4
(2.3)
P 		114
avr 231.3
(3) 		119.5
(-2.3) 		103.8
(-3) 		133.6
(-1.6) 		182
(0.7) 		186.7
(0.9) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 89
(3)
P 		30.3
(-2.7)
P 		27.3
(-3)
P 		43.1
(-1.5)
P 		62
B 62.6
(3)
P 		41.6
(-1)
P 		31.4
(-3)
P 		44.7
(-0.4)
P 		31
C 66.7
(3)
P 		65.2
(2.7)
P 		37.7
(-3)
P 		54.6
(0.5)
P 		29
avr 72.8
(3) 		45.7
(-1) 		32.1
(-3) 		47.5
(-0.7) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 50.7
(1.7)
P 		48.8
(1.4)
P 		24
(-3)
P 		24.4
(-2.9)
P 		58.2
(3)
P 		39.4
(-0.3)
P 		34
B 75
(2.1)
P 		43.9
(-0.9)
P 		22.5
(-3)
P 		49.1
(-0.4)
P 		84.6
(3)
P 		77.5
(2.3)
P 		62
C 75.5
(3)
P 		27.4
(-2.6)
P 		27.6
(-2.6)
P 		24
(-3)
P 		47
(-0.3)
P 		63.7
(1.6)
P 		52
avr 67.1
(3) 		40
(-0.8) 		24.7
(-3) 		32.5
(-1.9) 		63.3
(2.5) 		60.2
(2) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20733
Sequence Type Exemplar sequence
Representative Public ID C61156 NCBI
Target Description C61156 /REP_DB=TREMBL Accession /GB=C61156 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk225g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T01D1.2a.3 ENSEMBL cdna:known chromosome:CEL140:II:163086:170152:1 gene:T01D1.2 11/11 A 
T01D1.2c ENSEMBL cdna:known chromosome:CEL140:II:168532:170119:1 gene:T01D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:169797-170081(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01D1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37881 Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] ref|NP_493673.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans] 0.0
blast CAE62798 Hypothetical protein CBG06972 [Caenorhabditis briggsae] 0.0
blast AAB37882 Elav-type rna binding protein family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022295.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] 4.0E-97
blast AAO38606 Elav-type rna binding protein family protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022296.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] 8.0E-67
blast AAB37882 Elav-type rna binding protein family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022295.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] 5.0E-63
blast AAB37881 Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] ref|NP_493673.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-16
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.7E-8
Sequence
Target Sequence 
>C. ELEGANS:174097_AT
cagatttatatctaattttttgtattagttcttgtccctttaaaatatatgtcccagaac
tagcgcgcacgtttcttgtccactatcacacacccgtttgccacgtttttatgttttcat
tcttttatctctctctctctctctcgaaattccttcccatttatatcttgccttttcgaa
aacaaattccaaaaagcatggctatatatgtattatgtttttataagctttcttgtgtcc
actttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATTTATATCTAATTTTTTGTAT 700 205 19 Antisense
TAGTTCTTGTCCCTTTAAAATATAT 322 641 44 Antisense
GTCCCTTTAAAATATATGTCCCAGA 198 475 52 Antisense
GTTTGCCACGTTTTTATGTTTTCAT 485 451 114 Antisense
TATGTTTTCATTCTTTTATCTCTCT 188 657 128 Antisense
CTCGAAATTCCTTCCCATTTATATC 123 233 161 Antisense
TTCCCATTTATATCTTGCCTTTTCG 359 697 172 Antisense
ATATCTTGCCTTTTCGAAAACAAAT 24 21 181 Antisense
AGCATGGCTATATATGTATTATGTT 179 77 213 Antisense
GTTTTTATAAGCTTTCTTGTGTCCA 398 449 235 Antisense
TAAGCTTTCTTGTGTCCACTTTGCT 365 637 242 Antisense
Sequence Source Affymetrix Proprietary Database