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[174096_at]

Description C66029 /REP_DB=TREMBL Accession /GB=C66029 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk203e12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 49      4grp_highest_8_8 > 28      4grp_high_8_8 > 56      6grp_highest_nonorm > 68      6grp_total > 39      4grp_total > 63      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 1736.3
(3)
P 		1260.8
(-3)
P 		1701.1
(2.6)
P 		1683.3
(2.3)
P 		476
B 1788.8
(3)
P 		1654.8
(-0.9)
P 		1784.2
(2.9)
P 		1582.7
(-3)
P 		206
C 1675.3
(-0.7)
P 		1601.3
(-3)
P 		1791.6
(3)
P 		1713.5
(0.5)
P 		190
avr 1733.5
(2.4) 		1505.6
(-3) 		1759
(3) 		1659.8
(0.7) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1582
1 2 3 4 5 6 range
A 2080.7
(1)
P 		1691.8
(-0.9)
P 		1284
(-3)
P 		1489
(-2)
P 		2475.9
(3)
P 		2096.2
(1.1)
P 		1192
B 1965.3
(2)
P 		1788.9
(1.1)
P 		893.8
(-3)
P 		2129.5
(2.7)
P 		2099.3
(2.6)
P 		2188.1
(3)
P 		1294
C 1957.6
(0.9)
P 		1761
(-0.3)
P 		1327.6
(-3)
P 		2289.6
(3)
P 		1697.1
(-0.7)
P 		1853.2
(0.3)
P 		962
avr 2001.2
(2.4) 		1747.2
(0.8) 		1168.5
(-3) 		1969.4
(2.2) 		2090.8
(3) 		2045.8
(2.7) 		922
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 632.2
(3)
P 		273.7
(-2.6)
P 		444.7
(0.1)
P 		246.4
(-3)
P 		386
B 570.4
(3)
P 		408.7
(-1.2)
P 		413.4
(-1)
P 		337.3
(-3)
P 		233
C 554.6
(1.8)
P 		460.4
(0.1)
P 		624.4
(3)
P 		288.9
(-3)
P 		336
avr 585.7
(3) 		380.9
(-1.2) 		494.2
(1.1) 		290.9
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 636
1 2 3 4 5 6 range
A 383.6
(-1.7)
P 		601.7
(1.1)
P 		279.6
(-3)
P 		377.6
(-1.7)
P 		747.1
(3)
P 		510.4
(-0)
P 		468
B 683.8
(1.4)
P 		595.5
(0.6)
P 		217
(-3)
P 		564
(0.3)
P 		852.9
(3)
P 		815.9
(2.7)
P 		636
C 725.6
(3)
P 		537.3
(0.1)
P 		337.9
(-3)
P 		460.4
(-1.1)
P 		549.2
(0.3)
P 		620.4
(1.4)
P 		388
avr 597.7
(1.4) 		578.2
(1.1) 		278.2
(-3) 		467.3
(-0.4) 		716.4
(3) 		648.9
(2.1) 		438
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21737
Sequence Type Exemplar sequence
Representative Public ID C66029 NCBI
Target Description C66029 /REP_DB=TREMBL Accession /GB=C66029 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk203e12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171507 NCBI Caenorhabditis elegans F36D4.5b (F36D4.5) mRNA, complete cds. 11/11 None
F36D4.5b.1 ENSEMBL cdna:known chromosome:CEL140:V:9421879:9424086:-1 gene:F36D4.5 11/11 A 
F36D4.5b.4 ENSEMBL cdna:known chromosome:CEL140:V:9421879:9426475:-1 gene:F36D4.5 11/11 A 
F36D4.5b.3 ENSEMBL cdna:known chromosome:CEL140:V:9421879:9424088:-1 gene:F36D4.5 11/11 A 
F36D4.5b.2 ENSEMBL cdna:known chromosome:CEL140:V:9421879:9428343:-1 gene:F36D4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179324 2 1 NM_171507 174096_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9421914-9422286(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36D4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93489 Hypothetical protein F36D4.5a [Caenorhabditis elegans] ref|NP_741591.1| F36D4.5a [Caenorhabditis elegans] 1.0E-166
blast AAM29689 Hypothetical protein F36D4.5b [Caenorhabditis elegans] ref|NP_741592.1| F36D4.5b [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR008580 EMBL-EBI Eukaryotic protein of unknown function DUF862 3.1E-84
Sequence
Target Sequence 
>C. ELEGANS:174096_AT
ttatttgattttctcttcaccacttcccagccaactcaaatggttttcttgtgtaacatc
ggatagttttttggcgttttcttgccttttctctaaacggcttcattgaaacattatatg
actatgttataagttttccccccgaattgtgtgtatttatgaacctaccacttcgtttct
ttttccttcctgatccgctcatcagtcctcatcacctctttgccttaagtttccccaaaa
tgcattttcagtcaattcatctttcatcgaccctcattatatacacaagtgtcttcccta
tttatgaatctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTGATTTTCTCTTCACCACTT 430 679 17 Antisense
AATGGTTTTCTTGTGTAACATCGGA 27 163 55 Antisense
TAACATCGGATAGTTTTTTGGCGTT 520 637 70 Antisense
TCTTGCCTTTTCTCTAAACGGCTTC 347 613 96 Antisense
TTCCCCCCGAATTGTGTGTATTTAT 217 697 152 Antisense
TTATGAACCTACCACTTCGTTTCTT 511 667 173 Antisense
GCCTTAAGTTTCCCCAAAATGCATT 634 275 238 Antisense
AGTCAATTCATCTTTCATCGACCCT 309 61 266 Antisense
CATCGACCCTCATTATATACACAAG 575 211 281 Antisense
TATACACAAGTGTCTTCCCTATTTA 399 657 296 Antisense
GTGTCTTCCCTATTTATGAATCTAA 345 487 305 Antisense
Sequence Source Affymetrix Proprietary Database