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[174095_at]

Description C66945 /REP_DB=TREMBL Accession /GB=C66945 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234h10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2869
1 2 3 4 range
A 1403.8
(-0.8)
P 		697
(-2.7)
P 		593.9
(-3)
P 		2761.9
(3)
P 		2168
B 1405.6
(-1.3)
P 		579.8
(-3)
P 		615
(-2.9)
P 		3429.7
(3)
P 		2850
C 1447.9
(-0.6)
P 		561.5
(-3)
P 		560.9
(-3)
P 		2791.5
(3)
P 		2231
avr 1419.1
(-0.9) 		612.8
(-2.9) 		589.9
(-3) 		2994.4
(3) 		2405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 846
1 2 3 4 5 6 range
A 664.3
(-1.1)
P 		769.9
(-0.4)
P 		396.7
(-3)
P 		507.2
(-2.2)
P 		587.6
(-1.6)
P 		1242.9
(3)
P 		846
B 677.2
(0.3)
P 		687.8
(0.4)
P 		486.6
(-2.2)
P 		422.5
(-3)
P 		569.6
(-1.1)
P 		885.7
(3)
P 		463
C 866
(1.8)
P 		552.4
(-1.5)
P 		717.7
(0.3)
P 		408.9
(-3)
P 		861
(1.8)
P 		974.7
(3)
P 		566
avr 735.8
(-0) 		670
(-0.7) 		533.7
(-2.1) 		446.2
(-3) 		672.7
(-0.7) 		1034.4
(3) 		588
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 511.1
(3)
P 		151.3
(-3)
P 		155.3
(-2.9)
P 		404.3
(1.2)
P 		360
B 448.3
(0.1)
P 		143.2
(-3)
P 		142.5
(-3)
P 		730.9
(3)
P 		588
C 479.3
(3)
P 		161.4
(-3)
P 		195.5
(-2.4)
P 		470.7
(2.8)
P 		318
avr 479.6
(2.1) 		152
(-3) 		164.4
(-2.8) 		535.3
(3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 122.5
(-2)
P 		273.8
(2.2)
P 		86.4
(-3)
P 		128.6
(-1.8)
P 		177.3
(-0.5)
P 		302.6
(3)
P 		216
B 235.6
(0.4)
P 		228.9
(0.2)
P 		118.2
(-2.8)
P 		111.9
(-3)
P 		231.4
(0.3)
P 		330.3
(3)
P 		218
C 321
(2.9)
P 		168.6
(-0.9)
P 		182.7
(-0.5)
P 		82.2
(-3)
P 		278.6
(1.8)
P 		326.3
(3)
P 		244
avr 226.4
(0.4) 		223.8
(0.3) 		129.1
(-2.4) 		107.6
(-3) 		229.1
(0.4) 		319.7
(3) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21122
Sequence Type Exemplar sequence
Representative Public ID C66945 NCBI
Target Description C66945 /REP_DB=TREMBL Accession /GB=C66945 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234h10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171168(11), NM_171167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171168 NCBI Caenorhabditis elegans C05D11.7a (C05D11.7) mRNA, complete cds. 11/11 None
NM_171167 NCBI Caenorhabditis elegans C05D11.7b (C05D11.7) mRNA, complete cds. 11/11 A 
SNAP00000019451 ENSEMBL cdna:SNAP chromosome:CEL140:III:6416083:6419390:-1 11/11 None
GENEFINDER00000019465 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6416083:6419390:-1 11/11 None
C05D11.7b ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419390:-1 gene:C05D11.7 11/11 A 
C05D11.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6421648:-1 gene:C05D11.7 11/11 A 
C05D11.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:6415715:6419393:-1 gene:C05D11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6416104-6416383(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53832 Hypothetical protein C05D11.7a [Caenorhabditis elegans] ref|NP_741196.1| C05D11.7a [Caenorhabditis elegans] sp|Q11186|YPD7_CAEEL Hypothetical protein C05D11.7 in chromosome III 0.0
blast AAM15547 Hypothetical protein C05D11.7b [Caenorhabditis elegans] ref|NP_741195.1| C05D11.7b [Caenorhabditis elegans] 0.0
blast C88482 protein C05D11.7 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 7.3E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741196.1 2 10-32,45-67
NP_741195.1 2 10-32,45-67
C05D11.7b 2 10-32,45-67
C05D11.7a.2 2 10-32,45-67
C05D11.7a.1 2 10-32,45-67
SNAP00000019451 2 10-32,45-67
GENEFINDER00000019465 2 10-32,45-67
Sequence
Target Sequence 
>C. ELEGANS:174095_AT
aacaacatcaattcacatcatcccagccacctcaaccagccgaatcttctccgcgaagat
ttgaaaagggacgaagcggtcaacgtcgatacattcgtgatactattgattcaaggaagc
cttccaaaaagtcatcaatgactgcggctgtatctgttccaactatgtcatcggattccg
aaggagtagacggaaccgagaagctgtttctgccatcgaggaaggcatggcgagccagca
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACATCAATTCACATCATCCCA 366 135 16 Antisense
CTTCTCCGCGAAGATTTGAAAAGGG 430 199 61 Antisense
AGCGGTCAACGTCGATACATTCGTG 579 79 90 Antisense
GATACATTCGTGATACTATTGATTC 569 423 103 Antisense
GGAAGCCTTCCAAAAAGTCATCAAT 477 529 130 Antisense
GTCATCAATGACTGCGGCTGTATCT 402 467 146 Antisense
GGCTGTATCTGTTCCAACTATGTCA 261 541 161 Antisense
GTTCCAACTATGTCATCGGATTCCG 357 441 171 Antisense
GAACCGAGAAGCTGTTTCTGCCATC 239 347 208 Antisense
AGCTGTTTCTGCCATCGAGGAAGGC 586 81 217 Antisense
GAGGAAGGCATGGCGAGCCAGCAGC 422 405 233 Antisense
Sequence Source Affymetrix Proprietary Database