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[174092_at]

Description C69308 /REP_DB=TREMBL Accession /GB=C69308 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk361d10 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 13      6grp_total > 14      4grp_total > 21      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 154
(0.8)
P 		59.3
(-2.5)
A 		43.4
(-3)
A 		216.9
(3)
P 		174
B 173.9
(3)
P 		77.7
(-1.1)
A 		31.6
(-3)
A 		150.8
(2)
P 		142
C 151.8
(-0.1)
P 		100.2
(-1.7)
A 		57.5
(-3)
A 		252.6
(3)
P 		195
avr 159.9
(1.3) 		79.1
(-1.7) 		44.2
(-3) 		206.8
(3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 147.4
(1.6)
P 		108.1
(-1)
P 		169.2
(3)
P 		122
(-0.1)
P 		76.9
(-3)
A 		93
(-2)
M 		92
B 187.6
(3)
P 		163.1
(1.8)
P 		69.9
(-3)
P 		99.7
(-1.5)
P 		83.8
(-2.3)
P 		95.2
(-1.7)
P 		118
C 123.2
(-0.9)
P 		205.1
(3)
P 		80.2
(-3)
A 		144.3
(0.1)
P 		98
(-2.1)
P 		82.8
(-2.9)
P 		125
avr 152.7
(2.5) 		158.8
(3) 		106.4
(-1.3) 		122
(-0) 		86.2
(-3) 		90.3
(-2.7) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 56.1
(3)
P 		12.9
(-2.8)
A 		11.3
(-3)
A 		31.7
(-0.3)
P 		45
B 55.4
(3)
P 		19.2
(-1.5)
A 		7.3
(-3)
A 		32.1
(0.1)
P 		48
C 50.3
(3)
P 		28.8
(-1.3)
A 		20
(-3)
A 		42.6
(1.5)
P 		30
avr 53.9
(3) 		20.3
(-1.9) 		12.9
(-3) 		35.5
(0.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 27.2
(-1.3)
P 		38.4
(3)
P 		36.9
(2.4)
P 		31
(0.2)
P 		23.2
(-2.8)
A 		22.6
(-3)
M 		16
B 65.3
(3)
P 		54.3
(1.6)
P 		17
(-3)
P 		26.4
(-1.8)
P 		34
(-0.9)
P 		35.5
(-0.7)
P 		48
C 45.7
(0.6)
P 		62.6
(3)
P 		20.4
(-3)
A 		29
(-1.8)
P 		31.7
(-1.4)
P 		27.7
(-2)
P 		42
avr 46.1
(1.7) 		51.8
(3) 		24.8
(-3) 		28.8
(-2.1) 		29.6
(-1.9) 		28.6
(-2.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21667
Sequence Type Exemplar sequence
Representative Public ID C69308 NCBI
Target Description C69308 /REP_DB=TREMBL Accession /GB=C69308 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk361d10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072729 NCBI Caenorhabditis elegans C16D9.9 (C16D9.9) mRNA, complete cds. 11/11 None
SNAP00000043382 ENSEMBL cdna:SNAP chromosome:CEL140:V:8266951:8267185:1 9/11 None
GENEFINDER00000043384 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8266951:8267172:1 9/11 None
C16D9.9 ENSEMBL cdna:known chromosome:CEL140:V:8266831:8267253:1 gene:C16D9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8266872-8267196(+) 98.21 98.21
Public Domain and Genome References
Gene Title
Ensembl C16D9.9
Entrez Gene 259633 Entrez gene
SwissProt Q95Q85 EMBL-EBI
WormBase CE27696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68181 Hypothetical protein C16D9.9 [Caenorhabditis elegans] ref|NP_505130.1| C16D9.9 [Caenorhabditis elegans] 2.0E-21
blast AAK68181 Hypothetical protein C16D9.9 [Caenorhabditis elegans] ref|NP_505130.1| C16D9.9 [Caenorhabditis elegans] 3.0E-19
blast CAE66093 Hypothetical protein CBG11310 [Caenorhabditis briggsae] 3.0E-15
blast CAE66093 Hypothetical protein CBG11310 [Caenorhabditis briggsae] 8.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505130.1 1 7-26
C16D9.9 1 7-26
SNAP00000043382 1 7-26
GENEFINDER00000043384 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:174092_AT
tcatccctttttgcgtttcaatttgagtttttatttcaggtaattttcaaaaatgcaatc
tactctccgaattattttagtttttctcctggttcttgttctggttgatgcacaatatag
aatgatggctaattacggtccagcttggcgtcaaaagatgtggaggaaaactcgtgtctc
gtctccagcttttgaggatgttgcagacagtgggctgatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCCTTTTTGCGTTTCAATTTG 336 611 40 Antisense
AAATGCAATCTACTCTCCGAATTAT 430 119 90 Antisense
TCTACTCTCCGAATTATTTTAGTTT 430 613 98 Antisense
TCCTGGTTCTTGTTCTGGTTGATGC 173 595 126 Antisense
GAATGATGGCTAATTACGGTCCAGC 571 331 159 Antisense
AATTACGGTCCAGCTTGGCGTCAAA 320 173 170 Antisense
GGTCCAGCTTGGCGTCAAAAGATGT 654 497 176 Antisense
GGAGGAAAACTCGTGTCTCGTCTCC 551 513 201 Antisense
TCTCGTCTCCAGCTTTTGAGGATGT 371 611 216 Antisense
CCAGCTTTTGAGGATGTTGCAGACA 96 273 224 Antisense
TGTTGCAGACAGTGGGCTGATCGAC 373 563 238 Antisense
Sequence Source Affymetrix Proprietary Database