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[174091_s_at]

Description CEC2186 /REP_DB=TREMBL Accession /GB=C13218 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 397.2
(-2.5)
P 		397
(-2.5)
P 		357.2
(-3)
P 		811.8
(3)
P 		455
B 625.6
(-1.1)
P 		543.5
(-1.9)
P 		421.5
(-3)
P 		1072.7
(3)
P 		651
C 535.6
(-1.1)
P 		506.1
(-1.5)
P 		388.7
(-3)
P 		858.9
(3)
P 		470
avr 519.5
(-1.5) 		482.2
(-1.9) 		389.1
(-3) 		914.5
(3) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 271.9
(-3)
P 		370.3
(-1.6)
P 		679.2
(3)
P 		662.6
(2.8)
P 		488.6
(0.2)
P 		502
(0.4)
P 		407
B 509.7
(-1.4)
P 		511.2
(-1.4)
P 		701
(2.1)
P 		424
(-3)
P 		549.2
(-0.7)
P 		749.7
(3)
P 		326
C 496.6
(-1.3)
P 		473.2
(-1.8)
P 		463.1
(-2)
P 		537.9
(-0.4)
P 		417.7
(-3)
P 		694.5
(3)
P 		277
avr 426.1
(-3) 		451.6
(-2.3) 		614.4
(2.1) 		541.5
(0.1) 		485.2
(-1.4) 		648.7
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 144.6
(3)
P 		86.2
(-3)
P 		93.4
(-2.3)
P 		118.8
(0.3)
P 		58
B 199.5
(1.7)
P 		134.2
(-1.3)
P 		97.7
(-3)
P 		228.6
(3)
P 		131
C 177.3
(3)
P 		145.5
(-1.6)
P 		135.5
(-3)
P 		144.8
(-1.7)
P 		42
avr 173.8
(3) 		122
(-1.8) 		108.9
(-3) 		164.1
(2.1) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 50.1
(-3)
P 		131.7
(1.2)
P 		147.9
(2)
P 		168
(3)
P 		147.4
(2)
P 		122.2
(0.7)
P 		118
B 177.3
(-0.7)
P 		170.1
(-0.9)
P 		170.2
(-0.9)
P 		112.3
(-3)
P 		223.1
(1)
P 		279.5
(3)
P 		167
C 184.1
(0.7)
P 		144.4
(-1.3)
P 		117.9
(-2.5)
P 		108.2
(-3)
P 		135.2
(-1.7)
P 		232.5
(3)
P 		124
avr 137.2
(-2.4) 		148.7
(-1.6) 		145.3
(-1.8) 		129.5
(-3) 		168.6
(-0.1) 		211.4
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174091_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20835
Sequence Type Exemplar sequence
Representative Public ID CEC2186 NCBI
Target Description CEC2186 /REP_DB=TREMBL Accession /GB=C13218 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170991 NCBI Caenorhabditis elegans F07F6.8 (F07F6.8) mRNA, complete cds. 11/11 None
SNAP00000006556 ENSEMBL cdna:SNAP chromosome:CEL140:II:5424207:5425688:-1 11/11 None
GENEFINDER00000006570 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5422813:5425688:-1 11/11 None
F07F6.8 ENSEMBL cdna:known chromosome:CEL140:II:5424145:5425703:-1 gene:F07F6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5424187-5424531(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07F6.8
Entrez Gene 173926 Entrez gene
SwissProt Q8WQF7 EMBL-EBI
WormBase CE30073 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6869 lipid transport inferred from electronic annotation QuickGO AmiGO
42157 lipoprotein metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans 0.0
blast AAL38956 Hypothetical protein F07F6.7 [Caenorhabditis elegans] ref|NP_740988.1| F07F6.7 [Caenorhabditis elegans] 1.0E-144
blast AAL38957 Hypothetical protein F07F6.8 [Caenorhabditis elegans] ref|NP_740989.1| F07F6.8 [Caenorhabditis elegans] 1.0E-136
blast T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans 1.0E-121
blast AAL38957 Hypothetical protein F07F6.8 [Caenorhabditis elegans] ref|NP_740989.1| F07F6.8 [Caenorhabditis elegans] 1.0E-121
blast CAE59101 Hypothetical protein CBG02395 [Caenorhabditis briggsae] 1.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740989.1 1 80-102
F07F6.8 1 80-102
SNAP00000006556 1 80-102
GENEFINDER00000006570 4 80-102,106-123,374-396,469-491
Sequence
Target Sequence 
>C. ELEGANS:174091_S_AT
tggaatcgttctagacagtgtcacattggcgttgagcgccaagactcttggagaaggatc
cgtgtcggaacttggatcttctattttagaagcatcttccaaaatggaaatgatgcgcca
aaaagtggtaaaacactttttgaatgaagacgtctggaaagacgatgatgacgtcctctc
cgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATCGTTCTAGACAGTGTCACA 363 547 18 Antisense
ACAGTGTCACATTGGCGTTGAGCGC 696 105 32 Antisense
CGTTGAGCGCCAAGACTCTTGGAGA 620 247 47 Antisense
GACTCTTGGAGAAGGATCCGTGTCG 607 371 60 Antisense
GAAGGATCCGTGTCGGAACTTGGAT 124 335 70 Antisense
CCGTGTCGGAACTTGGATCTTCTAT 123 263 77 Antisense
GGAACTTGGATCTTCTATTTTAGAA 463 529 84 Antisense
ATTTTAGAAGCATCTTCCAAAATGG 118 13 100 Antisense
TGGAAATGATGCGCCAAAAAGTGGT 433 543 122 Antisense
CTTTTTGAATGAAGACGTCTGGAAA 576 63 153 Antisense
AGACGATGATGACGTCCTCTCCGAT 344 69 177 Antisense
Sequence Source Affymetrix Proprietary Database