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[174090_at] glycolate oxidase

Description C68680 /REP_DB=TREMBL Accession /GB=C68680 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk306e10 : 5prime end, single read.
Cluster 6grp_total > 70      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 101.7
(1.4)
P 		119
(3)
P 		56
(-3)
A 		75.7
(-1.1)
A 		63
B 108.3
(-2.2)
A 		129.2
(3)
A 		105.1
(-3)
A 		128.1
(2.7)
A 		24
C 97.1
(-3)
M 		137.4
(3)
A 		126.2
(1.3)
M 		97.6
(-2.9)
A 		40
avr 102.4
(-1.8) 		128.5
(3) 		95.8
(-3) 		100.5
(-2.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 71.4
(-2.8)
P 		106.4
(0.5)
P 		132.5
(3)
M 		110.9
(0.9)
A 		92.3
(-0.8)
P 		69.8
(-3)
A 		63
B 136.8
(3)
P 		106.5
(-1.3)
A 		97.4
(-2.6)
A 		123.6
(1.1)
P 		94.5
(-3)
P 		114.3
(-0.2)
P 		42
C 50
(-3)
A 		131.2
(1.5)
P 		129.3
(1.4)
A 		157.7
(3)
P 		82
(-1.2)
P 		106.7
(0.2)
P 		108
avr 86.1
(-3) 		114.7
(0.8) 		119.7
(1.5) 		130.7
(3) 		89.6
(-2.5) 		96.9
(-1.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 37
(3)
P 		25.8
(0.4)
P 		14.6
(-2.2)
A 		11.1
(-3)
A 		26
B 34.5
(3)
A 		31.9
(1.5)
A 		24.4
(-3)
A 		27.3
(-1.3)
A 		10
C 32.1
(0.4)
M 		39.5
(2)
A 		44
(3)
M 		16.5
(-3)
A 		28
avr 34.5
(3) 		32.4
(2.2) 		27.7
(0.5) 		18.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.2
(-3)
P 		37.8
(3)
P 		28.8
(0.8)
M 		28.1
(0.6)
A 		27.9
(0.6)
P 		17
(-2.1)
A 		25
B 47.6
(3)
P 		35.4
(-0.1)
A 		23.6
(-3)
A 		32.7
(-0.7)
P 		38.4
(0.7)
P 		42.6
(1.8)
P 		24
C 18.5
(-3)
A 		40
(3)
P 		32.9
(1)
A 		31.7
(0.7)
P 		26.5
(-0.8)
P 		35.7
(1.8)
P 		22
avr 26.4
(-3) 		37.7
(3) 		28.4
(-1.9) 		30.8
(-0.7) 		30.9
(-0.6) 		31.8
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21686
Sequence Type Exemplar sequence
Representative Public ID C68680 NCBI
Target Description C68680 /REP_DB=TREMBL Accession /GB=C68680 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk306e10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072817 NCBI Caenorhabditis elegans F41E6.5 (F41E6.5) mRNA, complete cds. 11/11 None
F41E6.5 ENSEMBL cdna:known chromosome:CEL140:V:8606156:8608004:1 gene:F41E6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072818 11/11 Negative Strand Matching Probes A 
F41E6.9 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8607715-8607995(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycolate oxidase
Ensembl F41E6.5
Entrez Gene 179241 Entrez gene
SwissProt O16457 EMBL-EBI
WormBase CE31936 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65955 Hypothetical protein F41E6.5 [Caenorhabditis elegans] ref|NP_505218.2| F41E6.5 [Caenorhabditis elegans] 0.0
blast CAE58356 Hypothetical protein CBG01477 [Caenorhabditis briggsae] 1.0E-137
blast EAL25953 GA15579-PA [Drosophila pseudoobscura] 9.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR000262 EMBL-EBI FMN-dependent alpha-hydroxy acid dehydrogenase 3.0E-103
Sequence
Target Sequence 
>C. ELEGANS:174090_AT
aattgccatataaacatttcttagagacgtaattggatgtcaatggtgcgaatttagtga
gcgattgattaaatttacacggaggaaagggtgttatgctggtaatttcggcagtccaaa
ctcgtcaacttctaggccttcagcaactcgtgtcttgggtttgtcgcttgggactgtagg
tgcagcgagagcctcatccaagtaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCCATATAAACATTTCTTAGA 49 179 49 Antisense
ATTGGATGTCAATGGTGCGAATTTA 677 1 80 Antisense
GGTGCGAATTTAGTGAGCGATTGAT 211 501 93 Antisense
AGGGTGTTATGCTGGTAATTTCGGC 446 55 136 Antisense
GTAATTTCGGCAGTCCAAACTCGTC 38 463 150 Antisense
AGTCCAAACTCGTCAACTTCTAGGC 117 49 161 Antisense
CCTTCAGCAACTCGTGTCTTGGGTT 358 269 185 Antisense
TGTCTTGGGTTTGTCGCTTGGGACT 62 557 199 Antisense
TGTCGCTTGGGACTGTAGGTGCAGC 533 557 210 Antisense
TGTAGGTGCAGCGAGAGCCTCATCC 309 559 223 Antisense
GCGAGAGCCTCATCCAAGTAATTTG 157 291 233 Antisense
Sequence Source Affymetrix Proprietary Database