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[174088_at]

Description CEC9775 /REP_DB=TREMBL Accession /GB=C12977 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk162b9 : 5prime end, single read.
Cluster 6grp_total > 01      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 31
(3)
M 		8
(-1.8)
A 		28.9
(2.6)
A 		2.5
(-3)
A 		29
B 31.3
(-1)
A 		53.2
(3)
A 		20
(-3)
A 		27.2
(-1.7)
P 		33
C 4.5
(-3)
A 		31.7
(-0.5)
A 		25
(-1.1)
A 		68.6
(3)
P 		64
avr 22.3
(-3) 		31
(2) 		24.6
(-1.7) 		32.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 8.4
(-1.3)
A 		27.3
(3)
A 		15.4
(0.3)
A 		1.1
(-3)
A 		19.9
(1.3)
A 		23
(2)
A 		26
B 14.9
(-1.8)
A 		63.5
(3)
A 		28.3
(-0.5)
A 		12.7
(-2)
A 		3
(-3)
A 		8
(-2.5)
A 		61
C 26.9
(3)
P 		17.6
(0.6)
A 		3.2
(-3)
A 		4.5
(-2.7)
A 		21.4
(1.6)
A 		4.8
(-2.6)
A 		24
avr 16.7
(-0.9) 		36.1
(3) 		15.6
(-1.1) 		6.1
(-3) 		14.8
(-1.3) 		11.9
(-1.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.3
(3)
M 		1.7
(-2.3)
A 		7.6
(1)
A 		0.4
(-3)
A 		11
B 10
(0.8)
A 		13.1
(3)
A 		4.6
(-3)
A 		5.8
(-2.2)
P 		9
C 1.5
(-3)
A 		9.1
(1.5)
A 		8.7
(1.3)
A 		11.6
(3)
P 		10
avr 7.6
(1.9) 		8
(3) 		7
(0.1) 		5.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		9.7
(3)
A 		3.4
(-1)
A 		0.3
(-3)
A 		6
(0.6)
A 		5.6
(0.4)
A 		9
B 5.2
(-1.8)
A 		21.1
(3)
A 		6.9
(-1.3)
A 		3.4
(-2.3)
A 		1.2
(-3)
A 		3
(-2.5)
A 		20
C 10
(3)
P 		5.4
(0)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		6.9
(1)
A 		1.6
(-2.5)
A 		9
avr 5.6
(-0.7) 		12.1
(3) 		3.7
(-1.8) 		1.5
(-3) 		4.7
(-1.2) 		3.4
(-1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22266
Sequence Type Exemplar sequence
Representative Public ID CEC9775 NCBI
Target Description CEC9775 /REP_DB=TREMBL Accession /GB=C12977 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk162b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076640 NCBI Caenorhabditis elegans C14F11.7 (C14F11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000008184 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6207268:6213866:-1 11/11 None
SNAP00000008166 ENSEMBL cdna:SNAP chromosome:CEL140:X:6208160:6208456:-1 11/11 None
C14F11.7 ENSEMBL cdna:known chromosome:CEL140:X:6208121:6208461:-1 gene:C14F11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6208188-6208451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14F11.7
Entrez Gene 180892 Entrez gene
SwissProt Q95QW8 EMBL-EBI
WormBase CE27685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80365 Hypothetical protein C14F11.2 [Caenorhabditis elegans] ref|NP_509042.1| C14F11.2 [Caenorhabditis elegans] 0.0
blast CAE61212 Hypothetical protein CBG05005 [Caenorhabditis briggsae] 0.0
blast AAK68176 Hypothetical protein C14F11.7 [Caenorhabditis elegans] ref|NP_509041.1| C14F11.7 [Caenorhabditis elegans] 3.0E-43
blast AAK68176 Hypothetical protein C14F11.7 [Caenorhabditis elegans] ref|NP_509041.1| C14F11.7 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0034
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.72
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008184 1 820-842
Sequence
Target Sequence 
>C. ELEGANS:174088_AT
atctcttcagattgttctcttgattgcaattttctctgcaactgttcaaggatgcttcga
ttcttcagactgcaaatttggaacctgtgacatggtcacacacagttgtaccgctggttt
tgcaccgattcaacgagacgatgaagaattttcaagtcacagagggcatcgcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTTCAGATTGTTCTCTTGATT 166 33 19 Antisense
GTTCTCTTGATTGCAATTTTCTCTG 600 443 32 Antisense
CAATTTTCTCTGCAACTGTTCAAGG 612 179 45 Antisense
AACTGTTCAAGGATGCTTCGATTCT 18 143 58 Antisense
GATGCTTCGATTCTTCAGACTGCAA 637 413 69 Antisense
GACTGCAAATTTGGAACCTGTGACA 71 375 86 Antisense
GTGACATGGTCACACACAGTTGTAC 352 481 105 Antisense
GTCACACACAGTTGTACCGCTGGTT 234 465 113 Antisense
CACAGTTGTACCGCTGGTTTTGCAC 694 193 119 Antisense
TTTGCACCGATTCAACGAGACGATG 620 667 137 Antisense
TCAAGTCACAGAGGGCATCGCTTCC 97 633 170 Antisense
Sequence Source Affymetrix Proprietary Database