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[174085_s_at] 40S ribosomal protein S5

Description C68152 /REP_DB=TREMBL Accession /GB=C68152 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280b10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 52      4grp_total > 17      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16675
1 2 3 4 range
A 26427.7
(-3)
P 		36345.8
(0.8)
P 		33189.3
(-0.4)
P 		42168
(3)
P 		15740
B 28680.6
(-3)
P 		28978.7
(-2.7)
P 		31270.6
(-0.6)
P 		35179.2
(3)
P 		6499
C 25492.8
(-3)
P 		27893.6
(-2)
P 		25836.3
(-2.9)
P 		40478.5
(3)
P 		14986
avr 26867
(-3) 		31072.7
(-1) 		30098.7
(-1.4) 		39275.2
(3) 		12408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9097
1 2 3 4 5 6 range
A 25071.1
(0.5)
P 		22730.1
(-1.6)
P 		27827.5
(3)
P 		24541.6
(0.1)
P 		21119.9
(-3)
P 		22887.4
(-1.4)
P 		6708
B 22308.2
(-0.6)
P 		22889.9
(-0.2)
P 		27580.1
(3)
P 		22347.4
(-0.5)
P 		19410.2
(-2.5)
P 		18730.3
(-3)
P 		8850
C 21383.7
(-1.7)
P 		24015.6
(1.2)
P 		25682.8
(3)
P 		22960.1
(0)
P 		21735.2
(-1.3)
P 		20157.3
(-3)
P 		5526
avr 22921
(-0.8) 		23211.9
(-0.6) 		27030.1
(3) 		23283
(-0.5) 		20755.1
(-2.8) 		20591.7
(-3) 		6438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3450
1 2 3 4 range
A 9622.3
(3)
P 		7889.7
(-0)
P 		8676.3
(1.4)
P 		6172.6
(-3)
P 		3450
B 9146
(3)
P 		7157.1
(-3)
P 		7246.1
(-2.7)
P 		7496.7
(-2)
P 		1989
C 8438.8
(1.4)
P 		8019.6
(0.3)
P 		9004.7
(3)
P 		6825.3
(-3)
P 		2179
avr 9069
(3) 		7688.8
(-0.7) 		8309
(1) 		6831.5
(-3) 		2238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3467
1 2 3 4 5 6 range
A 4621.7
(-3)
P 		8084
(3)
P 		6060.2
(-0.5)
P 		6224.3
(-0.2)
P 		6373.1
(0)
P 		5572.4
(-1.4)
P 		3462
B 7762.1
(2.6)
P 		7619.1
(2.2)
P 		6697.3
(-0.6)
P 		5919
(-3)
P 		7886.1
(3)
P 		6984.5
(0.2)
P 		1967
C 7926
(3)
P 		7327.9
(1.9)
P 		6536.7
(0.5)
P 		4617.3
(-3)
P 		7033.2
(1.4)
P 		6747.8
(0.9)
P 		3309
avr 6769.9
(0.4) 		7677
(3) 		6431.4
(-0.6) 		5586.9
(-3) 		7097.5
(1.3) 		6434.9
(-0.6) 		2090
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174085_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21423
Sequence Type Exemplar sequence
Representative Public ID C68152 NCBI
Target Description C68152 /REP_DB=TREMBL Accession /GB=C68152 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280b10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069676 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-5) (rps-5) mRNA, complete cds. 11/11 A 
SNAP00000031860 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11110188:11111016:-1 11/11 None
GENEFINDER00000031866 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11110188:11111016:-1 11/11 None
T05E11.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:11110074:11111017:-1 gene:T05E11.1 11/11 None
T05E11.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11110074:11111024:-1 gene:T05E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11110089-11110600(-) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S5
Gene Symbol rps-5
Ensembl T05E11.1
Entrez Gene 178012 Entrez gene
SwissProt P49041 EMBL-EBI
WormBase CE06360 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12794_AT 40S ribosomal protein S5 (RPS5A) at
ATH1-121501:265963_S_AT 40S ribosomal protein S5 (RPS5A) at
CANINE:1592300_X_AT similar to ribosomal protein S5 cfa
CANINE:1585704_X_AT similar to ribosomal protein S5 cfa
CANINE:1585721_X_AT similar to ribosomal protein S5 cfa
CANINE:1584772_X_AT similar to ribosomal protein S5 cfa
CANINE:1584422_X_AT similar to ribosomal protein S5 cfa
CANINE:1585012_X_AT similar to ribosomal protein S5 cfa
CANINE:1585225_X_AT similar to ribosomal protein S5 cfa
CANINE:1584734_X_AT similar to ribosomal protein S5 cfa
CANINE:1584643_X_AT similar to ribosomal protein S5 cfa
CANINE:1584321_X_AT similar to ribosomal protein S5 cfa
CANINE:1583795_X_AT similar to ribosomal protein S5 cfa
CANINE_2:CFA.787.1.A1_S_AT similar to ribosomal protein S5 cfa
DROSOPHILA_2:1630031_AT Ribosomal protein S5a dm
DROSGENOME1:153285_AT Ribosomal protein S5a dm
HU35KSUBB:RC_AA075580_F_AT ribosomal protein S5 hs
HU35KSUBD:RC_H93652_F_AT ribosomal protein S5 hs
HUGENEFL:U14970_AT ribosomal protein S5 hs
U133_X3P:G4506728_3P_AT ribosomal protein S5 hs
HG-U95AV2:32437_AT ribosomal protein S5 hs
HG-U95C:63954_AT ribosomal protein S5 hs
HG-U95C:63955_G_AT ribosomal protein S5 hs
PLASMODIUM_ANOPHELES:200024_AT ribosomal protein S5 hs
HG-U133_PLUS_2:200024_AT ribosomal protein S5 hs
HG-FOCUS:200024_AT ribosomal protein S5 hs
HG-U133A:200024_AT ribosomal protein S5 hs
HG-U133B:200024_AT ribosomal protein S5 hs
HG-U133A_2:200024_AT ribosomal protein S5 hs
U133_X3P:200024_AT ribosomal protein S5 hs
MOUSE430_2:1416054_AT ribosomal protein S5 mm
MOE430A:1416054_AT ribosomal protein S5 mm
MOUSE430A_2:1416054_AT ribosomal protein S5 mm
MU11KSUBA:U78085_S_AT ribosomal protein S5 mm
MG-U74AV2:99336_AT ribosomal protein S5 mm
MG-U74BV2:164610_F_AT ribosomal protein S5 mm
MU19KSUBB:TC27376_AT Ribosomal protein S5 (Rps5), mRNA mm
MU19KSUBB:TC30367_AT Ribosomal protein S5 (Rps5), mRNA mm
RG-U34A:X58465MRNA_G_AT ribosomal protein S5 rn
RG-U34A:X58465MRNA_AT ribosomal protein S5 rn
RAE230A:1398882_AT ribosomal protein S5 rn
RAT230_2:1398882_AT ribosomal protein S5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
15935 small ribosomal subunit inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92971 Hypothetical protein T05E11.1 [Caenorhabditis elegans] ref|NP_502077.1| Ribosomal Protein, Small subunit family member (rps-5) [Caenorhabditis elegans] sp|P49041|RS5_CAEEL 40S ribosomal protein S5 1.0E-114
blast CAE62003 Hypothetical protein CBG06011 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000235 EMBL-EBI Ribosomal protein S7 2.7E-70
Sequence
Target Sequence 
>C. ELEGANS:174085_S_AT
gtcaacgccgttatcaactcgggaccacgtgaagactccacccgtattggacgtgccgga
actgtccgcagacaagctgttgacgttgccccactcagaagagtcaaccaggctatctgg
cttctctgcactggagctcgtgaggctgccttcagaaacgttaagaccatcgccgaatgc
ttggctgatgagctcatcaacgccgccaagggatcctccaacagctacgctatcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACGCCGTTATCAACTCGGGAC 371 463 41 Antisense
AACTCGGGACCACGTGAAGACTCCA 487 139 56 Antisense
TGAAGACTCCACCCGTATTGGACGT 139 575 70 Antisense
GTGCCGGAACTGTCCGCAGACAAGC 450 477 93 Antisense
CGCAGACAAGCTGTTGACGTTGCCC 169 255 107 Antisense
GTTGCCCCACTCAGAAGAGTCAACC 522 439 125 Antisense
GTCAACCAGGCTATCTGGCTTCTCT 163 465 143 Antisense
TTCTCTGCACTGGAGCTCGTGAGGC 558 691 162 Antisense
AGAAACGTTAAGACCATCGCCGAAT 379 73 194 Antisense
CGAATGCTTGGCTGATGAGCTCATC 579 253 214 Antisense
TCCTCCAACAGCTACGCTATCAAGA 568 593 254 Antisense
Sequence Source Affymetrix Proprietary Database