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[174084_at]

Description CEC4682 /REP_DB=TREMBL Accession /GB=C09468 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk168g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 70      6grp_total > 12      4grp_total > 04      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 253.4
(-0)
P 		158.5
(-3)
P 		169.5
(-2.7)
P 		350.9
(3)
P 		192
B 253.3
(-0.2)
P 		173
(-2)
P 		131
(-3)
P 		388.8
(3)
P 		258
C 212.5
(-2.6)
P 		196.1
(-3)
P 		207.4
(-2.7)
P 		439.9
(3)
P 		244
avr 239.7
(-1.1) 		175.9
(-2.8) 		169.3
(-3) 		393.2
(3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 244.2
(0.3)
P 		297.8
(2.1)
P 		322
(3)
P 		208.6
(-1)
P 		193.1
(-1.5)
P 		151.6
(-3)
P 		170
B 308.6
(0.2)
P 		376.8
(3)
P 		278.8
(-1)
P 		291.5
(-0.5)
P 		254.2
(-2)
P 		229.6
(-3)
P 		147
C 297.5
(-0.1)
P 		403.2
(3)
P 		211.4
(-2.6)
P 		276.1
(-0.7)
P 		196.4
(-3)
P 		223.8
(-2.2)
P 		207
avr 283.4
(0.1) 		359.3
(3) 		270.7
(-0.4) 		258.7
(-0.8) 		214.6
(-2.5) 		201.7
(-3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 92.3
(3)
P 		34.4
(-3)
P 		44.3
(-2)
P 		51.4
(-1.2)
P 		58
B 80.8
(2.8)
P 		42.7
(-1.6)
P 		30.4
(-3)
P 		82.9
(3)
P 		53
C 70.3
(1.7)
P 		56.4
(-3)
P 		72.3
(2.4)
P 		74.2
(3)
P 		18
avr 81.1
(3) 		44.5
(-3) 		49
(-2.3) 		69.5
(1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 45
(-2.3)
P 		105.9
(3)
P 		70.1
(-0.1)
P 		52.9
(-1.6)
P 		58.3
(-1.1)
P 		36.9
(-3)
P 		69
B 107.4
(1.1)
P 		125.4
(3)
P 		67.7
(-3)
P 		77.2
(-2)
P 		103.3
(0.7)
P 		85.6
(-1.1)
P 		58
C 110.3
(1.9)
P 		123
(3)
P 		53.8
(-3)
P 		55.5
(-2.9)
P 		63.6
(-2.2)
P 		74.9
(-1.2)
P 		69
avr 87.6
(-0.3) 		118.1
(3) 		63.9
(-2.8) 		61.9
(-3) 		75.1
(-1.6) 		65.8
(-2.6) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21590
Sequence Type Exemplar sequence
Representative Public ID CEC4682 NCBI
Target Description CEC4682 /REP_DB=TREMBL Accession /GB=C09468 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk168g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171243(11), NM_171896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171243 NCBI Caenorhabditis elegans T07A9.12a (T07A9.12) mRNA, complete cds. 11/11 None
NM_171896 NCBI Caenorhabditis elegans T07A9.12b (T07A9.12) mRNA, complete cds. 11/11 None
GENEFINDER00000017777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:414274:415504:1 11/11 None
T07A9.12a ENSEMBL cdna:known chromosome:CEL140:IV:414250:415542:1 gene:T07A9.12 11/11 None
T07A9.12b ENSEMBL cdna:known chromosome:CEL140:IV:414250:415504:1 gene:T07A9.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017766 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:414525-415532(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07A9.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39285 Hypothetical protein T07A9.12a [Caenorhabditis elegans] ref|NP_741290.1| T07A9.12a [Caenorhabditis elegans] 6.0E-80
blast AAM97947 Hypothetical protein T07A9.12b [Caenorhabditis elegans] ref|NP_741291.1| T07A9.12b [Caenorhabditis elegans] 5.0E-77
blast AAK39285 Hypothetical protein T07A9.12a [Caenorhabditis elegans] ref|NP_741290.1| T07A9.12a [Caenorhabditis elegans] 1.0E-75
blast AAM97947 Hypothetical protein T07A9.12b [Caenorhabditis elegans] ref|NP_741291.1| T07A9.12b [Caenorhabditis elegans] 5.0E-75
blast AAK39285 Hypothetical protein T07A9.12a [Caenorhabditis elegans] ref|NP_741290.1| T07A9.12a [Caenorhabditis elegans] 5.0E-75
blast AAM97947 Hypothetical protein T07A9.12b [Caenorhabditis elegans] ref|NP_741291.1| T07A9.12b [Caenorhabditis elegans] 7.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741290.1 4 20-42,47-69,81-103,118-137
NP_741291.1 3 41-63,75-97,112-131
T07A9.12a 4 20-42,47-69,81-103,118-137
T07A9.12b 3 41-63,75-97,112-131
GENEFINDER00000017777 4 12-34,39-61,73-95,110-129
Sequence
Target Sequence 
>C. ELEGANS:174084_AT
tcgtattcatcatttatcttcgatcatgtgtcgaatttaaggattatagaggtcctactg
ttagagtaattctcaacatattccgtctcacatgcatcacgctcttcatatacttcatcg
ttgaaaaaatcagtggagagttggagaaatcagaagttgcaaatcggaatacgtatggga
tggtttttttgccaatgtggcttctcctggcttcgtggggatttcaaatgtgtcgggcaa
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTATTCATCATTTATCTTCGATC 117 605 14 Antisense
GGATTATAGAGGTCCTACTGTTAGA 390 509 54 Antisense
GAGTAATTCTCAACATATTCCGTCT 608 399 77 Antisense
TCAACATATTCCGTCTCACATGCAT 118 631 86 Antisense
TCACATGCATCACGCTCTTCATATA 17 629 101 Antisense
CTCTTCATATACTTCATCGTTGAAA 2 231 115 Antisense
GTTGCAAATCGGAATACGTATGGGA 376 425 169 Antisense
TACGTATGGGATGGTTTTTTTGCCA 4 649 183 Antisense
TTTTGCCAATGTGGCTTCTCCTGGC 593 677 200 Antisense
TCTCCTGGCTTCGTGGGGATTTCAA 350 611 216 Antisense
GGGGATTTCAAATGTGTCGGGCAAC 548 497 230 Antisense
Sequence Source Affymetrix Proprietary Database