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[174083_at]

Description CEC9735 /REP_DB=TREMBL Accession /GB=C12973 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk162b4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 75      6grp_total > 45      4grp_total > 56      6grp_highest_sub > Cu      6grp_cgc > 35      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 646
1 2 3 4 range
A 1415.6
(2.5)
P 		1153.6
(-3)
P 		1441.3
(3)
P 		1258.9
(-0.8)
P 		288
B 1391.2
(1.3)
P 		1191.6
(-3)
P 		1469.4
(3)
P 		1461.1
(2.8)
P 		278
C 1435.5
(-0.5)
P 		1516.1
(0.3)
P 		1799.6
(3)
P 		1171.7
(-3)
P 		628
avr 1414.1
(-0.3) 		1287.1
(-3) 		1570.1
(3) 		1297.2
(-2.8) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 889.6
(1.9)
P 		828.2
(0.9)
P 		959.7
(3)
P 		589.2
(-3)
P 		672.7
(-1.6)
P 		806.5
(0.5)
P 		371
B 1072.5
(3)
P 		893.7
(0.1)
P 		902.2
(0.2)
P 		777.4
(-1.8)
P 		706.6
(-3)
P 		901.3
(0.2)
P 		366
C 883.3
(2.8)
P 		892
(3)
P 		752.3
(0.5)
P 		633.5
(-1.6)
P 		555
(-3)
P 		851.1
(2.3)
P 		337
avr 948.5
(3) 		871.3
(1.5) 		871.4
(1.5) 		666.7
(-2.6) 		644.8
(-3) 		853
(1.1) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 515.4
(3)
P 		250.4
(-1.8)
P 		376.8
(0.5)
P 		184.3
(-3)
P 		331
B 443.7
(3)
P 		294.3
(-3)
P 		340.5
(-1.1)
P 		311.4
(-2.3)
P 		149
C 475.2
(0.9)
P 		435.9
(0.3)
P 		627.2
(3)
P 		197.6
(-3)
P 		430
avr 478.1
(3) 		326.9
(-0.7) 		448.2
(2.3) 		231.1
(-3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 164
(-2.4)
P 		294.6
(3)
P 		209
(-0.5)
P 		149.4
(-3)
P 		203
(-0.8)
P 		196.3
(-1.1)
P 		145
B 373.2
(3)
P 		297.5
(0.3)
P 		219.1
(-2.5)
P 		205.9
(-3)
P 		287.1
(-0.1)
P 		336.1
(1.7)
P 		167
C 327.4
(3)
P 		272.2
(1.3)
P 		191.5
(-1.1)
P 		127.4
(-3)
P 		179.6
(-1.4)
P 		284.9
(1.7)
P 		200
avr 288.2
(3) 		288.1
(3) 		206.5
(-0.9) 		160.9
(-3) 		223.2
(-0.1) 		272.4
(2.3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21289
Sequence Type Exemplar sequence
Representative Public ID CEC9735 NCBI
Target Description CEC9735 /REP_DB=TREMBL Accession /GB=C12973 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk162b4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028430 NCBI Caenorhabditis elegans LiPoate Ligase family member (lpl-1) (lpl-1) mRNA, complete cds. 11/11 None
ZC410.7c ENSEMBL cdna:known chromosome:CEL140:IV:9092195:9094424:-1 gene:ZC410.7 11/11 A 
ZC410.7a.1 ENSEMBL cdna:known chromosome:CEL140:IV:9092261:9094436:-1 gene:ZC410.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028429 8/11 Cross Hyb Matching Probes None
SNAP00000030928 8/11 Cross Hyb Matching Probes None
GENEFINDER00000030935 8/11 Cross Hyb Matching Probes None
ZC410.7b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177729 3 1 NM_001028430 174083_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9092324-9092615(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC410.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54911 Hypothetical protein ZC410.7c [Caenorhabditis elegans] ref|NP_001023601.1| LiPoate Ligase family member (lpl-1) [Caenorhabditis elegans] 1.0E-170
blast CAC35869 Hypothetical protein ZC410.7b [Caenorhabditis elegans] ref|NP_001023600.1| LiPoate Ligase family member (lpl-1) [Caenorhabditis elegans] 1.0E-169
blast CAE74104 Hypothetical protein CBG21764 [Caenorhabditis briggsae] 5.0E-84
blast CAA92571 Hypothetical protein ZC410.7a [Caenorhabditis elegans] ref|NP_501580.3| LiPoate Ligase family member (lpl-1) [Caenorhabditis elegans] gb|AAK69380.1| Ny [Caenorhabditis elegans] 5.0E-52
blast CAC35869 Hypothetical protein ZC410.7b [Caenorhabditis elegans] ref|NP_001023600.1| LiPoate Ligase family member (lpl-1) [Caenorhabditis elegans] 7.0E-51
blast CAE54911 Hypothetical protein ZC410.7c [Caenorhabditis elegans] ref|NP_001023601.1| LiPoate Ligase family member (lpl-1) [Caenorhabditis elegans] 7.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004143 EMBL-EBI Biotin/lipoate A/B protein ligase domain 1.1E-17
Sequence
Target Sequence 
>C. ELEGANS:174083_AT
cactacttccttatcccaggaaacatcccgaaatgtgaccgtttctgatgctcgtcctat
tcttctgaacgcttttgccaataactttgaatgccttctcaatgaacccaatgattattc
gacatgttccaatttaaaaattacgaatgttgtttctagttaacttcatctccttccatt
agtttttagtttttagttctagatttttcaatttttattagaattttatagaaattacca
aatcgccattgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTACTTCCTTATCCCAGGAAACA 308 193 21 Antisense
AGGAAACATCCCGAAATGTGACCGT 179 55 38 Antisense
GAAATGTGACCGTTTCTGATGCTCG 422 361 50 Antisense
TCGTCCTATTCTTCTGAACGCTTTT 252 603 72 Antisense
TCTTCTGAACGCTTTTGCCAATAAC 622 617 81 Antisense
TGCCAATAACTTTGAATGCCTTCTC 449 587 96 Antisense
GAATGCCTTCTCAATGAACCCAATG 559 329 109 Antisense
GAACCCAATGATTATTCGACATGTT 620 345 124 Antisense
GTTTCTAGTTAACTTCATCTCCTTC 152 451 172 Antisense
TCATCTCCTTCCATTAGTTTTTAGT 597 621 186 Antisense
TAGAAATTACCAAATCGCCATTGTT 58 653 249 Antisense
Sequence Source Affymetrix Proprietary Database