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[174081_at]

Description C69361 /REP_DB=TREMBL Accession /GB=C69361 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk362d11 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 22      4grp_high_8_8 > 19      6grp_total > 12      4grp_total > 07      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 87.2
(1.9)
P 		33.8
(-3)
A 		99.3
(3)
P 		75
(0.8)
P 		66
B 101.2
(3)
P 		73
(-2.7)
P 		78.2
(-1.6)
P 		71.4
(-3)
P 		30
C 78.7
(-2.6)
P 		104
(0.3)
P 		74.8
(-3)
P 		127.7
(3)
P 		53
avr 89
(2.3) 		70.3
(-3) 		84.1
(0.9) 		91.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 90.2
(1.2)
P 		94.2
(1.5)
P 		113.3
(2.9)
P 		73.2
(0)
P 		114.4
(3)
P 		31.7
(-3)
A 		83
B 103.7
(-0.4)
P 		149.9
(3)
P 		111.8
(0.2)
P 		138.4
(2.1)
P 		144.9
(2.6)
P 		69.4
(-3)
P 		81
C 152.9
(3)
P 		126.6
(1.4)
P 		117.5
(0.9)
P 		97.2
(-0.3)
P 		107.1
(0.3)
P 		52.1
(-3)
P 		101
avr 115.6
(2.3) 		123.6
(3) 		114.2
(2.2) 		102.9
(1.3) 		122.1
(2.9) 		51.1
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 31.8
(3)
P 		7.3
(-3)
A 		26
(1.6)
P 		11
(-2.1)
P 		25
B 32.3
(3)
P 		18
(-2)
P 		18.1
(-2)
P 		15.2
(-3)
P 		17
C 26
(0.2)
P 		29.9
(3)
P 		26.1
(0.3)
P 		21.5
(-3)
P 		8
avr 30
(3) 		18.4
(-1.9) 		23.4
(0.2) 		15.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16.6
(-1)
P 		33.5
(2.8)
P 		24.7
(0.8)
P 		18.6
(-0.6)
P 		34.5
(3)
P 		7.7
(-3)
A 		27
B 36.1
(-1.1)
P 		49.9
(1.4)
P 		27.2
(-2.8)
P 		36.6
(-1.1)
P 		58.9
(3)
P 		25.9
(-3)
P 		33
C 56.7
(3)
P 		38.6
(0.2)
P 		29.9
(-1.1)
P 		19.6
(-2.7)
P 		34.7
(-0.4)
P 		17.4
(-3)
P 		39
avr 36.5
(1.6) 		40.7
(2.5) 		27.3
(-0.6) 		24.9
(-1.2) 		42.7
(3) 		17
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20663
Sequence Type Exemplar sequence
Representative Public ID C69361 NCBI
Target Description C69361 /REP_DB=TREMBL Accession /GB=C69361 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk362d11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063103 NCBI Caenorhabditis elegans E04F6.10 (E04F6.10) mRNA, complete cds. 11/11 A 
E04F6.10 ENSEMBL cdna:known chromosome:CEL140:II:7213987:7216888:-1 gene:E04F6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032901 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032909 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7213992-7214272(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04F6.10
Entrez Gene 174186 Entrez gene
SwissProt Q19065 EMBL-EBI
WormBase CE35267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68365 Hypothetical protein E04F6.10 [Caenorhabditis elegans] ref|NP_495504.2| E04F6.10 [Caenorhabditis elegans] 6.0E-51
blast CAE67574 Hypothetical protein CBG13103 [Caenorhabditis briggsae] 5.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495504.2 1 37-59
E04F6.10 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:174081_AT
atttgtactccaattcttactactcgtcgatcgacttcttattcatcaataccaaccatc
gatcgtacgattagcgaagactcgatgctggtgattaaacgtttgtagttttatttcttt
aagacaatttatttattcaaaaactcttcattcattacgggtagataaattttctagttt
ttccattctatcaacatagacccaatgcttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGTACTCCAATTCTTACTACTC 294 17 19 Antisense
CAATTCTTACTACTCGTCGATCGAC 145 181 29 Antisense
CTCGTCGATCGACTTCTTATTCATC 4 233 41 Antisense
GACTTCTTATTCATCAATACCAACC 514 371 51 Antisense
TCAATACCAACCATCGATCGTACGA 396 633 64 Antisense
GATCGTACGATTAGCGAAGACTCGA 395 417 79 Antisense
GCGAAGACTCGATGCTGGTGATTAA 59 289 92 Antisense
GATGCTGGTGATTAAACGTTTGTAG 35 415 102 Antisense
AAAACTCTTCATTCATTACGGGTAG 702 129 158 Antisense
TTTCTAGTTTTTCCATTCTATCAAC 531 671 189 Antisense
ATCAACATAGACCCAATGCTTCTTT 103 27 208 Antisense
Sequence Source Affymetrix Proprietary Database