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[174079_at]

Description C68868 /REP_DB=TREMBL Accession /GB=C68868 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298h12 : 5prime end, single read.
Cluster 6grp_total > 89      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 32.7
(-1.9)
A 		24.4
(-3)
A 		68.1
(3)
A 		55.5
(1.3)
A 		44
B 45.5
(-0.4)
A 		100.5
(3)
A 		3.2
(-3)
A 		9.3
(-2.6)
A 		97
C 31.2
(-1.4)
A 		68.6
(2.9)
A 		69.6
(3)
A 		17
(-3)
A 		53
avr 36.5
(-1.5) 		64.5
(3) 		47
(0.2) 		27.3
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 50.7
(-0.3)
A 		41
(-1.3)
A 		72.4
(1.9)
A 		24.5
(-3)
A 		44.5
(-1)
A 		83.7
(3)
A 		59
B 34.1
(0.2)
A 		30.5
(-0.3)
A 		10.8
(-3)
A 		25.6
(-1)
A 		39.3
(0.9)
A 		54.2
(3)
M 		43
C 58.8
(1.6)
A 		43.8
(0.2)
A 		59.8
(1.7)
A 		8.9
(-3)
A 		73.4
(3)
A 		35.3
(-0.5)
A 		65
avr 47.9
(1.5) 		38.4
(-0) 		47.7
(1.4) 		19.7
(-3) 		52.4
(2.2) 		57.7
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 11.9
(0.2)
A 		5.3
(-3)
A 		17.8
(3)
A 		8.1
(-1.7)
A 		13
B 14.5
(0.4)
A 		24.8
(3)
A 		0.7
(-3)
A 		2
(-2.7)
A 		24
C 10.3
(-0.9)
A 		19.7
(1.7)
A 		24.3
(3)
A 		2.9
(-3)
A 		21
avr 12.2
(0.9) 		16.6
(3) 		14.3
(1.9) 		4.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.4
(-1.6)
A 		14.6
(0.5)
A 		15.8
(1.1)
A 		6.2
(-3)
A 		13.4
(0)
A 		20.4
(3)
A 		14
B 11.9
(0.2)
A 		10.2
(-0.4)
A 		2.6
(-3)
A 		6.8
(-1.6)
A 		16
(1.6)
A 		20.2
(3)
M 		18
C 21.8
(2.5)
A 		13.4
(0.2)
A 		15.2
(0.7)
A 		1.8
(-3)
A 		23.7
(3)
A 		11.8
(-0.3)
A 		22
avr 14.4
(1.5) 		12.7
(0.7) 		11.2
(-0) 		4.9
(-3) 		17.7
(3) 		17.5
(2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20272
Sequence Type Exemplar sequence
Representative Public ID C68868 NCBI
Target Description C68868 /REP_DB=TREMBL Accession /GB=C68868 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298h12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025890 NCBI Caenorhabditis elegans C54C8.12 (C54C8.12) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034211 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034214 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12465002-12465258(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565544 Entrez gene
SwissProt Q564S8 EMBL-EBI
WormBase CE38302 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79156 Hypothetical protein C54C8.12 [Caenorhabditis elegans] ref|NP_001021061.1| C54C8.12 [Caenorhabditis elegans] 2.0E-43
blast CAB05463 Hypothetical protein C54C8.9 [Caenorhabditis elegans] ref|NP_493163.1| C54C8.9 [Caenorhabditis elegans] 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:174079_AT
tggagtcattgctctggaatccccaattccggagttctatccgactgaaatatccaccaa
ggctcgctcccatggacacccggtcaacacactcggagaaagtgaggatccaaactttca
agttgacaacgtccctggggaacgagctcgcagacatgcagggccacgtagattctaccg
attctaccactcaaattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTCATTGCTCTGGAATCCCCA 326 549 29 Antisense
AATTCCGGAGTTCTATCCGACTGAA 347 177 53 Antisense
GTTCTATCCGACTGAAATATCCACC 7 445 62 Antisense
CTGAAATATCCACCAAGGCTCGCTC 287 239 73 Antisense
CACCCGGTCAACACACTCGGAGAAA 433 199 105 Antisense
AACTTTCAAGTTGACAACGTCCCTG 652 93 141 Antisense
CAACGTCCCTGGGGAACGAGCTCGC 34 183 155 Antisense
GAACGAGCTCGCAGACATGCAGGGC 393 347 168 Antisense
CATGCAGGGCCACGTAGATTCTACC 683 203 183 Antisense
TAGATTCTACCGATTCTACCACTCA 623 651 197 Antisense
CTACCGATTCTACCACTCAAATTGG 101 225 203 Antisense
Sequence Source Affymetrix Proprietary Database