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[174078_s_at]

Description C30400 /REP_DB=TREMBL Accession /GB=C30400 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 66      6grp_total > 55      4grp_total > 33      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 712
1 2 3 4 range
A 1168.3
(-3)
P 		1880.2
(3)
P 		1503.8
(-0.2)
P 		1843.5
(2.7)
P 		712
B 1339.4
(-3)
P 		1664.2
(0.7)
P 		1873.3
(3)
P 		1613.3
(0.1)
P 		534
C 1267.8
(-3)
P 		1702.9
(3)
P 		1567.4
(1.1)
P 		1462.2
(-0.3)
P 		435
avr 1258.5
(-3) 		1749.1
(3) 		1648.2
(1.8) 		1639.7
(1.7) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 1574
(2.9)
P 		1083.5
(-3)
P 		1580.4
(3)
P 		1459.7
(1.5)
P 		1464.6
(1.6)
P 		1300.2
(-0.4)
P 		497
B 1561.2
(-3)
P 		1655.4
(0.7)
P 		1681.8
(1.7)
P 		1635.9
(-0.1)
P 		1715.9
(3)
P 		1644.9
(0.2)
P 		155
C 1316.8
(-1.1)
P 		1549.8
(1.5)
P 		1301
(-1.3)
P 		1253.9
(-1.8)
P 		1148.4
(-3)
P 		1683.6
(3)
P 		535
avr 1484
(-0.1) 		1429.6
(-3) 		1521.1
(1.8) 		1449.8
(-1.9) 		1443
(-2.3) 		1542.9
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 425.4
(3)
P 		408.1
(2.3)
P 		393.1
(1.8)
P 		269.9
(-3)
P 		156
B 427.1
(2.5)
P 		411
(1.5)
P 		434.1
(3)
P 		343.8
(-3)
P 		90
C 419.7
(0.5)
P 		489.6
(1.9)
P 		546.3
(3)
P 		246.6
(-3)
P 		300
avr 424.1
(1.8) 		436.2
(2.2) 		457.8
(3) 		286.8
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 290.2
(-3)
P 		385.3
(0.8)
P 		344.2
(-0.9)
P 		370.2
(0.2)
P 		442
(3)
P 		316.6
(-2)
P 		152
B 543.2
(-0.2)
P 		551
(-0)
P 		408.4
(-3)
P 		433.3
(-2.5)
P 		697.1
(3)
P 		613.4
(1.3)
P 		289
C 488.1
(1.5)
P 		472.9
(1.3)
P 		331.1
(-1.5)
P 		252.2
(-3)
P 		371.6
(-0.7)
P 		563.6
(3)
P 		311
avr 440.5
(0.5) 		469.7
(1.7) 		361.2
(-2.6) 		351.9
(-3) 		503.6
(3) 		497.9
(2.8) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174078_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21307
Sequence Type Exemplar sequence
Representative Public ID C30400 NCBI
Target Description C30400 /REP_DB=TREMBL Accession /GB=C30400 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069889 NCBI Caenorhabditis elegans F11A10.2 (F11A10.2) mRNA, complete cds. 11/11 None
SNAP00000006201 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12084448:12085198:1 11/11 None
GENEFINDER00000006209 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12084448:12085198:1 11/11 None
F11A10.2 ENSEMBL cdna:known chromosome:CEL140:IV:12084448:12085286:1 gene:F11A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12084847-12085217(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A10.2
Entrez Gene 178147 Entrez gene
SwissProt Q19335 EMBL-EBI
WormBase CE28910 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267062_AT hydroxyproline-rich glycoprotein family protein at
CANINE_2:CFAAFFX.29680.1.S1_AT similar to splicing factor 3a, subunit 2, 66kDa (predicted) cfa
DROSOPHILA_2:1624603_AT dm
DROSGENOME1:141246_AT dm
CHICKEN:GGA.17237.1.S1_AT splicing factor 3a, subunit 2, 66kDa gga
HG-U133_PLUS_2:209381_X_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U133A:209381_X_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U133A_2:209381_X_AT splicing factor 3a, subunit 2, 66kDa hs
U133_X3P:G13325229_3P_S_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U133A_2:37462_I_AT splicing factor 3a, subunit 2, 66kDa hs
HG-FOCUS:37462_I_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U133_PLUS_2:37462_I_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U133A:37462_I_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U95AV2:37462_I_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U95AV2:37463_R_AT splicing factor 3a, subunit 2, 66kDa hs
HG-U95E:80551_AT splicing factor 3a, subunit 2, 66kDa hs
MOUSE430A_2:1450576_A_AT splicing factor 3a, subunit 2 mm
MOE430A:1450576_A_AT splicing factor 3a, subunit 2 mm
MOUSE430_2:1450576_A_AT splicing factor 3a, subunit 2 mm
MOUSE430_2:1455546_S_AT splicing factor 3a, subunit 2 mm
MOE430A:1455546_S_AT splicing factor 3a, subunit 2 mm
MOUSE430A_2:1455546_S_AT splicing factor 3a, subunit 2 mm
MU11KSUBB:MSA.2021.0_AT splicing factor 3a, subunit 2 mm
MG-U74AV2:92196_F_AT splicing factor 3a, subunit 2 mm
MG-U74AV2:92197_R_AT splicing factor 3a, subunit 2 mm
MU19KSUBB:TC28025_R_AT Splicing factor 3a, subunit 2 (Sf3a2), mRNA mm
MU19KSUBB:TC28025_S_AT Splicing factor 3a, subunit 2 (Sf3a2), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92593 Hypothetical protein F11A10.2 [Caenorhabditis elegans] ref|NP_502290.1| F11A10.2 [Caenorhabditis elegans] 1.0E-119
blast CAE62176 Hypothetical protein CBG06223 [Caenorhabditis briggsae] 1.0E-117
blast AAH45907 Splicing factor 3a, subunit 2 [Danio rerio] ref|NP_957337.1| splicing factor 3a, subunit 2 [Danio rerio] gb|AAH66469.1| Splicing factor 3a, subunit 2 [Danio rerio] 1.0E-95
Sequence
Target Sequence 
>C. ELEGANS:174078_S_AT
ttctcttccaaattgattatccggagattgctgacggtattgcgccacgtcatcgattta
tgtctgcttatgagcaaaagattcagcctccagacaagagatggcaatacctcttgtttg
ctgctgagccgtatgaaacgattggattcaaaattccatcaagagaagttgacaaatctg
aaaaattttggacgatgtggaacaaagacacgaagcaattcttcttacaagtcgcattca
aattggaacgactcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTTCCAAATTGATTATCCGGA 196 693 13 Antisense
GAGATTGCTGACGGTATTGCGCCAC 286 397 36 Antisense
CGCCACGTCATCGATTTATGTCTGC 8 257 55 Antisense
ATCGATTTATGTCTGCTTATGAGCA 575 35 64 Antisense
GCAAAAGATTCAGCCTCCAGACAAG 300 319 86 Antisense
TCAGCCTCCAGACAAGAGATGGCAA 329 625 95 Antisense
GATGGCAATACCTCTTGTTTGCTGC 229 407 112 Antisense
CTCTTGTTTGCTGCTGAGCCGTATG 303 229 123 Antisense
GCTGCTGAGCCGTATGAAACGATTG 321 297 132 Antisense
GCAATTCTTCTTACAAGTCGCATTC 77 323 227 Antisense
CGCATTCAAATTGGAACGACTCGAT 477 253 245 Antisense
Sequence Source Affymetrix Proprietary Database