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[174077_at]

Description C68712 /REP_DB=TREMBL Accession /GB=C68712 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303b6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3606
1 2 3 4 range
A 453.5
(-2.6)
P 		349.9
(-2.9)
P 		283.6
(-3)
P 		3060.4
(3)
P 		2777
B 507
(-2.7)
P 		325.5
(-3)
P 		369.8
(-2.9)
P 		3620.4
(3)
P 		3295
C 451.1
(-2.7)
P 		256.2
(-3)
P 		247.7
(-3)
P 		3853.2
(3)
P 		3606
avr 470.5
(-2.7) 		310.5
(-3) 		300.4
(-3) 		3511.3
(3) 		3211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 240
(-3)
P 		279.8
(-2.4)
P 		404.9
(-0.7)
P 		424.3
(-0.4)
P 		415.6
(-0.6)
P 		672.3
(3)
P 		432
B 232
(-3)
P 		323.3
(-1.9)
P 		385.2
(-1.2)
P 		410.4
(-0.9)
P 		487.6
(0)
P 		735.2
(3)
P 		503
C 328.1
(-3)
P 		336.7
(-2.9)
P 		391.5
(-2.3)
P 		389.1
(-2.3)
P 		428.4
(-1.9)
P 		888.7
(3)
P 		561
avr 266.7
(-3) 		313.3
(-2.4) 		393.9
(-1.5) 		407.9
(-1.3) 		443.9
(-0.9) 		765.4
(3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 698
1 2 3 4 range
A 165.1
(-1.5)
P 		76
(-3)
P 		74.1
(-3)
P 		448
(3)
P 		374
B 161.7
(-2.3)
P 		80.4
(-3)
P 		85.7
(-3)
P 		771.5
(3)
P 		691
C 149.3
(-2.2)
P 		73.7
(-3)
P 		86.3
(-2.9)
P 		649.7
(3)
P 		576
avr 158.7
(-2.1) 		76.7
(-3) 		82
(-2.9) 		623.1
(3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 44.2
(-3)
P 		99.5
(-0.2)
P 		88.2
(-0.8)
P 		107.6
(0.2)
P 		125.4
(1.1)
P 		163.7
(3)
P 		120
B 80.7
(-3)
P 		107.6
(-2.2)
P 		93.5
(-2.6)
P 		108.7
(-2.1)
P 		198.1
(0.6)
P 		274.2
(3)
P 		194
C 121.6
(-1.8)
P 		102.7
(-2.3)
P 		99.7
(-2.4)
P 		78.3
(-3)
P 		138.6
(-1.3)
P 		297.5
(3)
P 		219
avr 82.2
(-3) 		103.3
(-2.2) 		93.8
(-2.6) 		98.2
(-2.4) 		154
(-0.4) 		245.1
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22398
Sequence Type Exemplar sequence
Representative Public ID C68712 NCBI
Target Description C68712 /REP_DB=TREMBL Accession /GB=C68712 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303b6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075813 NCBI Caenorhabditis elegans C05D9.9 (C05D9.9) mRNA, complete cds. 11/11 None
C05D9.9 ENSEMBL cdna:known chromosome:CEL140:X:1122485:1124221:-1 gene:C05D9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015519 3/11 Cross Hyb Matching Probes None
SNAP00000015514 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1122494-1122991(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D9.9
Entrez Gene 180466 Entrez gene
SwissProt Q95ZM9 EMBL-EBI
WormBase CE27653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68162 Hypothetical protein C05D9.9 [Caenorhabditis elegans] ref|NP_508214.1| C05D9.9 [Caenorhabditis elegans] 3.0E-48
blast CAE68119 Hypothetical protein CBG13762 [Caenorhabditis briggsae] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:174077_AT
ggcacgcttgtgatcgagaacttccaatcggatgattcaggggattatttttctaatgat
gaattggagagggtacactacactgctgatggtcaaatttggaagcttgcgagatctcga
atcgcagtttttccaattgattaatctcctcttcttgccatgtagatttttcagaaaatc
acaaaaacctcttcgatgcaccataaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACGCTTGTGATCGAGAACTTCC 258 535 21 Antisense
GAACTTCCAATCGGATGATTCAGGG 371 351 38 Antisense
GATTCAGGGGATTATTTTTCTAATG 173 431 54 Antisense
GGAGAGGGTACACTACACTGCTGAT 226 519 86 Antisense
GGTACACTACACTGCTGATGGTCAA 92 505 92 Antisense
GATGGTCAAATTTGGAAGCTTGCGA 605 405 108 Antisense
GGAAGCTTGCGAGATCTCGAATCGC 572 529 121 Antisense
CTCGAATCGCAGTTTTTCCAATTGA 35 233 136 Antisense
CAATTGATTAATCTCCTCTTCTTGC 43 181 154 Antisense
CTCCTCTTCTTGCCATGTAGATTTT 556 235 166 Antisense
AAAACCTCTTCGATGCACCATAAAC 309 131 204 Antisense
Sequence Source Affymetrix Proprietary Database