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[174076_at]

Description C58991 /REP_DB=TREMBL Accession /GB=C58991 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 98      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 92      6grp_total > 95      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 156.3
(-2.3)
P 		161
(-1.8)
P 		148.5
(-3)
P 		212.5
(3)
P 		64
B 161.9
(-2.3)
P 		153.8
(-3)
P 		168.6
(-1.8)
P 		228.2
(3)
P 		74
C 216.8
(2.6)
P 		156.6
(-2.1)
P 		144.6
(-3)
P 		222
(3)
P 		77
avr 178.3
(-0.8) 		157.1
(-2.7) 		153.9
(-3) 		220.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 293.3
(-0.2)
P 		214.6
(-3)
P 		278.6
(-0.8)
P 		384.6
(3)
P 		385.4
(3)
P 		351.3
(1.8)
P 		171
B 214.6
(-3)
P 		263.4
(-1.2)
P 		274
(-0.8)
P 		271
(-0.9)
P 		371.2
(2.8)
P 		375.9
(3)
P 		161
C 183.5
(-3)
P 		200.7
(-2.6)
P 		218.2
(-2.2)
P 		361.9
(1.4)
P 		384.2
(1.9)
P 		429.4
(3)
P 		246
avr 230.5
(-2.8) 		226.2
(-3) 		256.9
(-1.8) 		339.2
(1.3) 		380.3
(2.8) 		385.5
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 56.9
(3)
P 		35
(-2.1)
P 		38.8
(-1.2)
P 		31.1
(-3)
P 		26
B 51.6
(3)
P 		38
(-3)
P 		39.1
(-2.5)
P 		48.6
(1.7)
P 		14
C 71.8
(3)
P 		45
(-1.7)
P 		50.4
(-0.7)
P 		37.4
(-3)
P 		34
avr 60.1
(3) 		39.3
(-2.9) 		42.8
(-1.9) 		39
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 54.1
(-3)
P 		76.3
(-0.9)
P 		60.7
(-2.4)
P 		97.5
(1.2)
P 		116.3
(3)
P 		85.5
(0)
P 		62
B 74.7
(-2.4)
P 		87.7
(-1.5)
P 		66.5
(-3)
P 		71.8
(-2.6)
P 		150.8
(3)
P 		140.2
(2.2)
P 		84
C 68
(-2.1)
P 		61.2
(-2.6)
P 		55.5
(-3)
P 		72.8
(-1.8)
P 		124.3
(1.7)
P 		143.7
(3)
P 		88
avr 65.6
(-2.6) 		75.1
(-1.8) 		60.9
(-3) 		80.7
(-1.3) 		130.5
(3) 		123.1
(2.4) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21446
Sequence Type Exemplar sequence
Representative Public ID C58991 NCBI
Target Description C58991 /REP_DB=TREMBL Accession /GB=C58991 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068638 NCBI Caenorhabditis elegans C17H12.2 (C17H12.2) mRNA, complete cds. 11/11 None
C17H12.2 ENSEMBL cdna:known chromosome:CEL140:IV:6786842:6789605:-1 gene:C17H12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6786857-6787453(-) 97.49 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.2
Entrez Gene 177441 Entrez gene
SwissProt O45086 EMBL-EBI
WormBase CE16863 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592914_S_AT similar to CG7289-PA cfa
CANINE_2:CFA.275.1.A1_AT similar to CG7289-PA cfa
CANINE_2:CFAAFFX.25294.1.S1_AT similar to CG7289-PA cfa
DROSOPHILA_2:1641097_AT dm
DROSGENOME1:153750_AT dm
CHICKEN:GGAAFFX.2797.1.S1_AT similar to RIKEN cDNA 2510039O18 gga
HU35KSUBA:AA203111_AT KIAA2013 hs
HU35KSUBA:RC_AA291551_AT KIAA2013 hs
HU35KSUBA:RC_AA284976_AT KIAA2013 hs
HU35KSUBD:RC_T46915_F_AT KIAA2013 hs
U133_X3P:HS2.110906.2.S1_3P_AT KIAA2013 hs
U133_X3P:HS.110906.0.S2_3P_AT KIAA2013 hs
U133_X3P:HS.110906.0.S1_3P_AT KIAA2013 hs
HG-U133_PLUS_2:1555933_AT KIAA2013 hs
HG-U133_PLUS_2:224706_AT KIAA2013 hs
HG-U133B:224706_AT KIAA2013 hs
HG-U133_PLUS_2:224708_AT KIAA2013 hs
HG-U133B:224708_AT KIAA2013 hs
HG-U95E:85758_AT KIAA2013 hs
HG-U95D:89388_AT KIAA2013 hs
HG-U95D:72181_I_AT KIAA2013 hs
HG-U95D:72183_F_AT KIAA2013 hs
MOUSE430A_2:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MOE430A:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430_2:1438646_X_AT RIKEN cDNA 2510039O18 gene mm
MU11KSUBB:MSA.13280.0_S_AT RIKEN cDNA 2510039O18 gene mm
MG-U74AV2:96325_AT RIKEN cDNA 2510039O18 gene mm
MOE430A:1451078_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430A_2:1451078_AT RIKEN cDNA 2510039O18 gene mm
MOUSE430_2:1451078_AT RIKEN cDNA 2510039O18 gene mm
MG-U74AV2:162292_R_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
MU19KSUBC:TC39152_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
MU11KSUBA:D18902_RC_AT RIKEN cDNA 2510039O18 gene (2510039O18Rik), mRNA mm
RG-U34C:RC_AI180416_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
RAE230A:1371654_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
RAT230_2:1371654_AT similar to RIKEN cDNA 2510039O18 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC02581 Hypothetical protein C17H12.2 [Caenorhabditis elegans] ref|NP_501039.1| C17H12.2 [Caenorhabditis elegans] 0.0
blast CAE61479 Hypothetical protein CBG05373 [Caenorhabditis briggsae] 0.0
blast EAL34010 GA20240-PA [Drosophila pseudoobscura] 6.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501039.1 2 34-53,541-563
C17H12.2 2 34-53,541-563
Sequence
Target Sequence 
>C. ELEGANS:174076_AT
gctaggcctcattagataatttatattgttttaaagattgtacatacaggaaaacaaatt
ccttaataaggacccttcatatataatttatataccgaatccttgcacattcatatgttt
tatatattttctctcttttccattttacatcatttccctgctacgtgtagagtaggccaa
atgccttcagccttaacttacctaattttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAGGCCTCATTAGATAATTTATA 343 303 42 Antisense
TAAGGACCCTTCATATATAATTTAT 294 637 108 Antisense
ATTTATATACCGAATCCTTGCACAT 433 15 127 Antisense
GAATCCTTGCACATTCATATGTTTT 136 331 138 Antisense
CTCTTTTCCATTTTACATCATTTCC 395 229 174 Antisense
TTTCCATTTTACATCATTTCCCTGC 644 667 178 Antisense
ATCATTTCCCTGCTACGTGTAGAGT 576 29 190 Antisense
TCCCTGCTACGTGTAGAGTAGGCCA 42 597 196 Antisense
GAGTAGGCCAAATGCCTTCAGCCTT 214 399 211 Antisense
CCAAATGCCTTCAGCCTTAACTTAC 699 273 218 Antisense
TCAGCCTTAACTTACCTAATTTTCG 600 599 228 Antisense
Sequence Source Affymetrix Proprietary Database