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[174075_at]

Description C68240 /REP_DB=TREMBL Accession /GB=C68240 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300b2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 57      6grp_total > 29      4grp_total > 50      6grp_cgc > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2608
1 2 3 4 range
A 652.9
(-1.8)
P 		2687
(3)
P 		2388.8
(2.3)
P 		164
(-3)
P 		2523
B 658.3
(-2.1)
P 		2752.3
(3)
P 		2209.1
(1.7)
P 		273.4
(-3)
P 		2479
C 538.7
(-2.2)
P 		2771.7
(3)
P 		2278.6
(1.8)
P 		208.7
(-3)
P 		2563
avr 616.6
(-2) 		2737
(3) 		2292.2
(1.9) 		215.4
(-3) 		2522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2577
1 2 3 4 5 6 range
A 3695.6
(2.7)
P 		3001.4
(1)
P 		1380.7
(-3)
P 		2416.1
(-0.5)
P 		3824.7
(3)
P 		2201.5
(-1)
P 		2444
B 3272.2
(3)
P 		3064.8
(2.4)
P 		1247.3
(-3)
P 		2971.3
(2.1)
P 		3256.7
(3)
P 		2284.8
(0.1)
P 		2025
C 3335.1
(2.4)
P 		2692.9
(0.3)
P 		1712.2
(-3)
P 		2489.7
(-0.4)
P 		3517.8
(3)
P 		2224.1
(-1.3)
P 		1806
avr 3434.3
(2.7) 		2919.7
(1.2) 		1446.7
(-3) 		2625.7
(0.4) 		3533.1
(3) 		2236.8
(-0.7) 		2086
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 773
1 2 3 4 range
A 237.7
(-0.9)
P 		583.3
(2.6)
P 		624.5
(3)
P 		24
(-3)
P 		601
B 209.9
(-1.5)
P 		679.8
(3)
P 		511.9
(1.4)
P 		58.3
(-3)
P 		622
C 178.3
(-1.9)
P 		796.9
(3)
P 		794.2
(3)
P 		35.2
(-3)
P 		762
avr 208.6
(-1.4) 		686.7
(3) 		643.5
(2.6) 		39.2
(-3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1022
1 2 3 4 5 6 range
A 681.3
(-0.3)
P 		1067.4
(2.4)
P 		300.7
(-3)
P 		612.8
(-0.8)
P 		1154.1
(3)
P 		536
(-1.3)
P 		853
B 1138.6
(1.9)
P 		1020.2
(1.2)
P 		302.9
(-3)
P 		787
(-0.2)
P 		1323.1
(3)
P 		852
(0.2)
P 		1020
C 1236.2
(3)
P 		821.7
(-0.1)
P 		435.8
(-3)
P 		500.7
(-2.5)
P 		1138.3
(2.3)
P 		744.6
(-0.7)
P 		800
avr 1018.7
(1.7) 		969.8
(1.4) 		346.5
(-3) 		633.5
(-1) 		1205.2
(3) 		710.9
(-0.5) 		859
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20579
Sequence Type Exemplar sequence
Representative Public ID C68240 NCBI
Target Description C68240 /REP_DB=TREMBL Accession /GB=C68240 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300b2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C68240
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C68240 C68240 /REP_DB=TREMBL Accession /GB=C68240 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300b2 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10201143-10201426(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174075_AT
cccagtgtcattttcgttcatttgcttcttcttttcctaattttttatttttcaatcccg
tcaaaatttcccatatttttagatgctcttttgttcttcatgaatttctcttggctctgt
gtcagtaaacgatgatctggaaatgttctagaacgttcaagaaacattatgttgttcata
tatttttgtacaatagcgccccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGTGTCATTTTCGTTCATTTGC 229 259 53 Antisense
TTCAATCCCGTCAAAATTTCCCATA 393 685 103 Antisense
AATTTCCCATATTTTTAGATGCTCT 36 175 117 Antisense
TAGATGCTCTTTTGTTCTTCATGAA 354 653 132 Antisense
GTTCTTCATGAATTTCTCTTGGCTC 373 443 145 Antisense
TCATGAATTTCTCTTGGCTCTGTGT 261 621 150 Antisense
TTCTCTTGGCTCTGTGTCAGTAAAC 18 691 158 Antisense
GGCTCTGTGTCAGTAAACGATGATC 620 539 165 Antisense
AAACGATGATCTGGAAATGTTCTAG 278 127 179 Antisense
GAACGTTCAAGAAACATTATGTTGT 677 347 203 Antisense
ATATTTTTGTACAATAGCGCCCCCA 361 17 232 Antisense
Sequence Source Affymetrix Proprietary Database