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[174074_at]

Description C62419 /REP_DB=TREMBL Accession /GB=C62419 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286c2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 38      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2332
1 2 3 4 range
A 2967.1
(3)
P 		1113.3
(-2.2)
P 		846.1
(-3)
P 		1842.9
(-0.2)
P 		2121
B 2662
(3)
P 		1511
(-0.4)
P 		635.4
(-3)
P 		1774
(0.4)
P 		2027
C 2951.8
(3)
P 		1697.3
(-0.5)
P 		824.2
(-3)
P 		1591.7
(-0.8)
P 		2128
avr 2860.3
(3) 		1440.5
(-1.1) 		768.6
(-3) 		1736.2
(-0.2) 		2092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3372
1 2 3 4 5 6 range
A 1570.6
(-2.1)
P 		1919.1
(-1.4)
P 		4051.6
(3)
P 		1463.1
(-2.3)
P 		1191.6
(-2.9)
P 		1140.9
(-3)
P 		2911
B 2034.7
(-0.1)
P 		2001.2
(-0.2)
P 		3513.7
(3)
P 		2542
(0.9)
P 		679.5
(-3)
P 		1347.3
(-1.6)
P 		2834
C 796.8
(-2.8)
P 		1778.8
(-0.4)
P 		3174.8
(3)
P 		2117.7
(0.4)
P 		726.4
(-3)
P 		1176.9
(-1.9)
P 		2448
avr 1467.4
(-1.7) 		1899.7
(-0.7) 		3580
(3) 		2040.9
(-0.4) 		865.8
(-3) 		1221.7
(-2.2) 		2714
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 933
1 2 3 4 range
A 1080.3
(3)
P 		241.7
(-2.9)
P 		221.2
(-3)
P 		269.8
(-2.7)
P 		859
B 848.9
(3)
P 		373.2
(-1.1)
P 		147.2
(-3)
P 		378
(-1)
P 		702
C 977.1
(3)
P 		488
(-1.1)
P 		287.3
(-2.8)
P 		268.4
(-3)
P 		709
avr 968.8
(3) 		367.6
(-1.8) 		218.6
(-3) 		305.4
(-2.3) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 647
1 2 3 4 5 6 range
A 289.5
(-2.9)
P 		682.5
(1)
P 		882.4
(3)
P 		371.1
(-2.1)
P 		359.6
(-2.2)
P 		277.8
(-3)
P 		605
B 708
(1.5)
P 		666.1
(1.1)
P 		853.2
(3)
P 		673.3
(1.1)
P 		276.1
(-3)
P 		502.4
(-0.6)
P 		577
C 295.3
(-2.4)
P 		542.8
(0.2)
P 		808.1
(3)
P 		425.9
(-1)
P 		235
(-3)
P 		394
(-1.3)
P 		573
avr 430.9
(-1.5) 		630.5
(0.7) 		847.9
(3) 		490.1
(-0.8) 		290.2
(-3) 		391.4
(-1.9) 		558
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22196
Sequence Type Exemplar sequence
Representative Public ID C62419 NCBI
Target Description C62419 /REP_DB=TREMBL Accession /GB=C62419 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077226 NCBI Caenorhabditis elegans T14B1.1 (T14B1.1) mRNA, complete cds. 11/11 None
T14B1.1.2 ENSEMBL cdna:known chromosome:CEL140:X:9664427:9667286:-1 gene:T14B1.1 11/11 A 
T14B1.1.1 ENSEMBL cdna:known chromosome:CEL140:X:9664427:9668687:-1 gene:T14B1.1 11/11 A 
T14B1.1.3 ENSEMBL cdna:known chromosome:CEL140:X:9665356:9667119:-1 gene:T14B1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9665438-9665718(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B1.1
Entrez Gene 181181 Entrez gene
SwissProt Q22474 EMBL-EBI
WormBase CE01662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86862 Hypothetical protein T14B1.1 [Caenorhabditis elegans] ref|NP_509627.1| T14B1.1 [Caenorhabditis elegans] 0.0
blast CAE69774 Hypothetical protein CBG16058 [Caenorhabditis briggsae] 8.0E-13
Sequence
Target Sequence 
>C. ELEGANS:174074_AT
tattttagctagtggttgttttcaactagatagtcttattttttcgtttctgtccattat
aaccccctacctcgcctcttttgaagtgatgattatcacatctacctcttttacatcccc
tttcgacctcaatctatctctttcctacctctccttgtaccacttagtgattaacaaccc
accaaagctacctctctaaccgcacatattttgtgatgaccctcctaatctaagtcaatt
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTAGCTAGTGGTTGTTTTCAA 301 567 15 Antisense
GGTTGTTTTCAACTAGATAGTCTTA 694 505 28 Antisense
GATAGTCTTATTTTTTCGTTTCTGT 519 425 43 Antisense
TTATTTTTTCGTTTCTGTCCATTAT 229 679 50 Antisense
CTACCTCGCCTCTTTTGAAGTGATG 665 225 81 Antisense
ATTATCACATCTACCTCTTTTACAT 699 13 106 Antisense
CTCTCCTTGTACCACTTAGTGATTA 521 225 163 Antisense
GTGATTAACAACCCACCAAAGCTAC 467 479 181 Antisense
ACCTCTCTAACCGCACATATTTTGT 110 87 204 Antisense
CATATTTTGTGATGACCCTCCTAAT 669 213 219 Antisense
GACCCTCCTAATCTAAGTCAATTAC 613 259 232 Antisense
Sequence Source Affymetrix Proprietary Database