[Home] | [Total List]

[174073_at]

Description C70278 /REP_DB=TREMBL Accession /GB=C70278 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk385d5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 29      6grp_total > 94      4grp_total > 04      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37973
1 2 3 4 range
A 8234.6
(-1.1)
P 		2451.7
(-2.9)
P 		2108.3
(-3)
P 		21083.5
(3)
P 		18975
B 11778.7
(0.4)
P 		2511.9
(-2.8)
P 		1843.5
(-3)
P 		19536.8
(3)
P 		17693
C 7703.2
(-2)
P 		2643
(-2.8)
P 		1507.4
(-3)
P 		39480.2
(3)
P 		37973
avr 9238.8
(-1.2) 		2535.5
(-2.8) 		1819.7
(-3) 		26700.2
(3) 		24881

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9893
1 2 3 4 5 6 range
A 12057.9
(-0.4)
P 		7870.7
(-3)
P 		12941.4
(0.1)
P 		12950
(0.1)
P 		17611.3
(3)
P 		13556.4
(0.5)
P 		9741
B 7718.8
(-3)
P 		8706.4
(-2.4)
P 		10698.9
(-1.2)
P 		15106.9
(1.5)
P 		17560.9
(3)
P 		8710.5
(-2.4)
P 		9842
C 10049.8
(-1.5)
P 		13727.8
(2)
P 		8477.5
(-3)
P 		14237.8
(2.5)
P 		12156.4
(0.5)
P 		14772
(3)
P 		6295
avr 9942.2
(-3) 		10101.6
(-2.8) 		10705.9
(-2.2) 		14098.2
(1.3) 		15776.2
(3) 		12346.3
(-0.5) 		5834
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6230
1 2 3 4 range
A 2998.2
(2.8)
P 		532.2
(-3)
P 		551.1
(-3)
P 		3086.2
(3)
P 		2554
B 3756.1
(2.3)
P 		620.4
(-2.7)
P 		427.2
(-3)
P 		4163.3
(3)
P 		3736
C 2550
(-1)
P 		759.9
(-2.8)
P 		525.4
(-3)
P 		6657
(3)
P 		6132
avr 3101.4
(0.8) 		637.5
(-2.8) 		501.2
(-3) 		4635.5
(3) 		4134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4977
1 2 3 4 5 6 range
A 2222.8
(-3)
P 		2799.2
(-1.9)
P 		2818.4
(-1.8)
P 		3284.4
(-0.9)
P 		5314.3
(3)
P 		3300.6
(-0.9)
P 		3092
B 2685.8
(-2.9)
P 		2898
(-2.6)
P 		2598
(-3)
P 		4001.3
(-1.1)
P 		7134.8
(3)
P 		3248.1
(-2.1)
P 		4537
C 3725
(0.4)
P 		4188.8
(1.4)
P 		2157.7
(-3)
P 		2863.2
(-1.5)
P 		3933.6
(0.8)
P 		4945
(3)
P 		2787
avr 2877.9
(-2.3) 		3295.3
(-1.4) 		2524.7
(-3) 		3383
(-1.2) 		5460.9
(3) 		3831.2
(-0.3) 		2936
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22440
Sequence Type Exemplar sequence
Representative Public ID C70278 NCBI
Target Description C70278 /REP_DB=TREMBL Accession /GB=C70278 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk385d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C70278
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C70278 C70278 /REP_DB=TREMBL Accession /GB=C70278 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk385d5 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1504408-1504740(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174073_AT
taatcctaagcccttacctaacttgcctgcttccatctatatcaaagcccaatttcctta
cctcatttctctccaattccagaaaacttgaccggctcaaccatgtgacttctgacaatt
ttcctcaatcctccgggcacaggaaccctgtaacaattctcgacttctcgtaaatggaag
cacttcttcaaatgctctgcaacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCTAAGCCCTTACCTAACTTG 256 265 52 Antisense
TTGCCTGCTTCCATCTATATCAAAG 175 703 74 Antisense
TATCAAAGCCCAATTTCCTTACCTC 670 655 91 Antisense
CCTCATTTCTCTCCAATTCCAGAAA 134 269 112 Antisense
CCAGAAAACTTGACCGGCTCAACCA 546 261 130 Antisense
GGCTCAACCATGTGACTTCTGACAA 334 539 145 Antisense
TTCTGACAATTTTCCTCAATCCTCC 371 693 161 Antisense
TCCTCCGGGCACAGGAACCCTGTAA 541 291 180 Antisense
AACCCTGTAACAATTCTCGACTTCT 174 147 195 Antisense
CAATTCTCGACTTCTCGTAAATGGA 146 181 205 Antisense
ACTTCTTCAAATGCTCTGCAACACA 520 103 233 Antisense
Sequence Source Affymetrix Proprietary Database