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[174071_at]

Description C61573 /REP_DB=TREMBL Accession /GB=C61573 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk243a3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 34      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 47      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8855
1 2 3 4 range
A 128
(-3)
P 		7701.3
(2.1)
P 		8982.7
(3)
P 		288.3
(-2.9)
P 		8855
B 149.9
(-3)
P 		8199.6
(2.9)
P 		8283.4
(3)
P 		381.7
(-2.8)
P 		8134
C 133.8
(-3)
P 		6916.5
(2)
P 		8323.6
(3)
P 		401.2
(-2.8)
P 		8190
avr 137.2
(-3) 		7605.8
(2.3) 		8529.9
(3) 		357.1
(-2.8) 		8393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2062
1 2 3 4 5 6 range
A 2786.4
(-2.6)
P 		4726.3
(3)
P 		2664.1
(-3)
P 		2744.5
(-2.8)
P 		3712.2
(0)
P 		3522.6
(-0.5)
P 		2062
B 3047.1
(-3)
P 		4635.2
(3)
P 		3143
(-2.6)
P 		3335.5
(-1.9)
P 		3451.7
(-1.5)
P 		3276.3
(-2.1)
P 		1588
C 2705
(-3)
P 		4389.4
(3)
P 		3156.2
(-1.4)
P 		3154.9
(-1.4)
P 		3775.6
(0.8)
P 		3098.7
(-1.6)
P 		1684
avr 2846.2
(-3) 		4583.6
(3) 		2987.8
(-2.5) 		3078.3
(-2.2) 		3646.5
(-0.2) 		3299.2
(-1.4) 		1737
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2859
1 2 3 4 range
A 46.6
(-3)
P 		1671.7
(1.2)
P 		2348.2
(3)
P 		42.2
(-3)
P 		2306
B 47.8
(-3)
P 		2025.1
(3)
P 		1919.4
(2.7)
P 		81.3
(-2.9)
P 		1977
C 44.3
(-3)
P 		1988.5
(1.1)
P 		2901
(3)
P 		67.6
(-3)
P 		2857
avr 46.2
(-3) 		1895.1
(1.7) 		2389.5
(3) 		63.7
(-3) 		2343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1167
1 2 3 4 5 6 range
A 513.6
(-3)
P 		1680.9
(3)
P 		580.2
(-2.7)
P 		696.1
(-2.1)
P 		1120.2
(0.1)
P 		857.6
(-1.2)
P 		1167
B 1060.2
(-0.7)
P 		1542.9
(3)
P 		763.2
(-3)
P 		883.5
(-2.1)
P 		1402.4
(1.9)
P 		1221.7
(0.5)
P 		780
C 1002.6
(0.1)
P 		1339.3
(3)
P 		803.3
(-1.6)
P 		634.5
(-3)
P 		1221.7
(2)
P 		1037.3
(0.4)
P 		705
avr 858.8
(-1.9) 		1521
(3) 		715.6
(-3) 		738
(-2.8) 		1248.1
(1) 		1038.9
(-0.6) 		805
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20606
Sequence Type Exemplar sequence
Representative Public ID C61573 NCBI
Target Description C61573 /REP_DB=TREMBL Accession /GB=C61573 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk243a3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063565 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-95) (pqn-95) mRNA, complete cds. 11/11 None
ZK1067.7 ENSEMBL cdna:known chromosome:CEL140:II:9225113:9227141:-1 gene:ZK1067.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014743 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014746 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9225156-9225454(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-95
Ensembl ZK1067.7
Entrez Gene 174464 Entrez gene
SwissProt Q23390 EMBL-EBI
WormBase CE03844 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93886 Hypothetical protein ZK1067.7 [Caenorhabditis elegans] ref|NP_495966.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-95) [Caenorhabditis elegans] 1.0E-69
blast CAE57866 Hypothetical protein CBG00905 [Caenorhabditis briggsae] 8.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495966.1 1 7-24
ZK1067.7 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:174071_AT
atttgccaacaaacctgccagaatacctgtcaacaagccgctcaaatcgttgttccatgc
caatcgagctcttctggatgtggatgctcatctggatattctcaatgcggtggatcatgc
tgccgtcgtcgttaagcatccccttccctgaattctatgaacgaattcttaccgtatccg
cgttttctatgcgacaacttctgttttcgtttccccatcccacttctcacataactttta
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCCAACAAACCTGCCAGAATA 287 15 13 Antisense
CAGAATACCTGTCAACAAGCCGCTC 94 205 31 Antisense
CCATGCCAATCGAGCTCTTCTGGAT 669 271 67 Antisense
AGCTCTTCTGGATGTGGATGCTCAT 616 79 79 Antisense
CAATGCGGTGGATCATGCTGCCGTC 616 181 115 Antisense
TCATGCTGCCGTCGTCGTTAAGCAT 507 619 127 Antisense
TCCCCTTCCCTGAATTCTATGAACG 367 597 151 Antisense
GAACGAATTCTTACCGTATCCGCGT 685 345 171 Antisense
GTATCCGCGTTTTCTATGCGACAAC 493 453 186 Antisense
TGCGACAACTTCTGTTTTCGTTTCC 39 577 202 Antisense
TCCCACTTCTCACATAACTTTTATT 621 597 230 Antisense
Sequence Source Affymetrix Proprietary Database