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[174069_at]

Description C66934 /REP_DB=TREMBL Accession /GB=C66934 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234g1 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 43      6grp_total > 21      4grp_total > 07      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 143.3
(0.1)
P 		92.4
(-3)
A 		142.7
(0.1)
P 		191.2
(3)
A 		99
B 128.6
(3)
P 		97.3
(-3)
A 		117.5
(0.9)
P 		108.2
(-0.9)
A 		31
C 175.9
(3)
P 		111.6
(-2.2)
A 		131.9
(-0.5)
P 		101.2
(-3)
M 		75
avr 149.3
(3) 		100.4
(-3) 		130.7
(0.7) 		133.5
(1.1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 145.8
(-2.1)
P 		168.6
(-1.4)
P 		303.9
(3)
P 		134.9
(-2.4)
P 		177.6
(-1.1)
P 		117.8
(-3)
A 		186
B 249.8
(3)
P 		228
(1.5)
P 		226.8
(1.5)
P 		248.9
(2.9)
P 		218.7
(0.9)
P 		160.3
(-3)
P 		90
C 182.8
(-1.8)
P 		320.2
(3)
P 		147.2
(-3)
P 		184.7
(-1.7)
P 		174.8
(-2)
P 		196.3
(-1.3)
P 		173
avr 192.8
(-0.4) 		238.9
(3) 		226
(2) 		189.5
(-0.7) 		190.4
(-0.6) 		158.1
(-3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 52.2
(3)
P 		20.1
(-3)
A 		37.3
(0.2)
P 		28
(-1.5)
A 		32
B 41
(3)
P 		24
(-2.7)
A 		27.2
(-1.6)
P 		23.1
(-3)
A 		18
C 58.2
(3)
P 		32.1
(-0.8)
A 		46
(1.2)
P 		17.1
(-3)
M 		41
avr 50.5
(3) 		25.4
(-2.4) 		36.8
(0) 		22.7
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 26.9
(-3)
P 		59.9
(2)
P 		66.2
(3)
P 		34.2
(-1.9)
P 		53.6
(1.1)
P 		28.7
(-2.7)
A 		39
B 86.9
(2.6)
P 		75.9
(0.7)
P 		55.1
(-3)
P 		65.9
(-1.1)
P 		88.9
(3)
P 		59.8
(-2.2)
P 		34
C 67.8
(0)
P 		97.7
(3)
P 		37.5
(-3)
P 		37.2
(-3)
P 		56.6
(-1.1)
P 		65.7
(-0.2)
P 		61
avr 60.5
(-0.2) 		77.8
(3) 		52.9
(-1.7) 		45.8
(-3) 		66.4
(0.9) 		51.4
(-2) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20727
Sequence Type Exemplar sequence
Representative Public ID C66934 NCBI
Target Description C66934 /REP_DB=TREMBL Accession /GB=C66934 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234g1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062769 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-234) (tag-234) mRNA, complete cds. 11/11 None
GENEFINDER00000011037 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5864159:5866937:1 9/11 None
F55C12.7.1 ENSEMBL cdna:known chromosome:CEL140:II:5864159:5866933:1 gene:F55C12.7 11/11 None
F55C12.7.2 ENSEMBL cdna:known chromosome:CEL140:II:5864159:5864936:1 gene:F55C12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5864173-5864824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-234
Ensembl F55C12.7
Entrez Gene 173996 Entrez gene
SwissProt Q95ZS9 EMBL-EBI
WormBase CE28455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73880 Temporarily assigned gene name protein 234 [Caenorhabditis elegans] ref|NP_495170.1| Temporarily Assigned Gene name family member (tag-234) [Caenorhabditis elegans] 2.0E-53
blast AAK73880 Temporarily assigned gene name protein 234 [Caenorhabditis elegans] ref|NP_495170.1| Temporarily Assigned Gene name family member (tag-234) [Caenorhabditis elegans] 1.0E-28
blast T34307 hypothetical protein F55C12.3 - Caenorhabditis elegans 3.0E-25
blast CAE59212 Hypothetical protein CBG02525 [Caenorhabditis briggsae] 2.0E-14
blast CAE59213 Hypothetical protein CBG02526 [Caenorhabditis briggsae] 5.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495170.1 1 7-29
F55C12.7.1 1 7-29
F55C12.7.2 1 7-29
GENEFINDER00000011037 2 7-29,93-115
Sequence
Target Sequence 
>C. ELEGANS:174069_AT
ttctcctgacggtcgtgacagttgcttatagtttacaatgttattatggacaaattgtaa
atggacaaacaacagtcccatttgttagtgagccgtgcccattttctaaatactgcatga
aaattttccaaacgggatcttacaataatatttatgctacttatggttgtggaactaacc
aatgttcgagcagtggatgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTGACGGTCGTGACAGTTGC 422 693 23 Antisense
GACGGTCGTGACAGTTGCTTATAGT 283 377 30 Antisense
GACAGTTGCTTATAGTTTACAATGT 563 363 39 Antisense
ATGGACAAACAACAGTCCCATTTGT 354 49 83 Antisense
CAGTCCCATTTGTTAGTGAGCCGTG 698 207 95 Antisense
ATTTGTTAGTGAGCCGTGCCCATTT 130 17 102 Antisense
GCCGTGCCCATTTTCTAAATACTGC 698 281 114 Antisense
TTCCAAACGGGATCTTACAATAATA 431 695 148 Antisense
TTATGCTACTTATGGTTGTGGAACT 545 653 174 Antisense
GTGGAACTAACCAATGTTCGAGCAG 277 491 191 Antisense
CAATGTTCGAGCAGTGGATGTTCAA 609 179 202 Antisense
Sequence Source Affymetrix Proprietary Database