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[174067_at]

Description C63302 /REP_DB=TREMBL Accession /GB=C63302 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318d5 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 47      6grp_total > 47      4grp_total > 15      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 227.1
(1.5)
P 		131.8
(-2.1)
A 		107
(-3)
M 		266.5
(3)
P 		160
B 294.8
(3)
P 		121
(-3)
A 		127.8
(-2.8)
P 		186.2
(-0.7)
P 		174
C 195.8
(-0)
P 		103.2
(-3)
A 		154.5
(-1.3)
P 		288.6
(3)
P 		185
avr 239.2
(2.6) 		118.7
(-3) 		129.8
(-2.5) 		247.1
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 262.6
(3)
P 		180.3
(-0.1)
P 		134.7
(-1.8)
P 		101.8
(-3)
A 		185.7
(0.1)
P 		248.7
(2.5)
P 		161
B 239.3
(1.9)
P 		163.6
(-0.7)
P 		147
(-1.3)
P 		128.1
(-2)
P 		98.1
(-3)
P 		269.8
(3)
P 		172
C 198.9
(2.4)
P 		208.6
(3)
P 		149.9
(-0.7)
P 		148
(-0.8)
A 		113.3
(-3)
P 		193.3
(2)
P 		95
avr 233.6
(2.8) 		184.2
(0.1) 		143.9
(-2) 		126
(-3) 		132.4
(-2.7) 		237.3
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 82.7
(3)
P 		28.6
(-2.9)
A 		28
(-3)
M 		39
(-1.8)
P 		55
B 94
(3)
P 		29.9
(-3)
A 		29.6
(-3)
P 		39.7
(-2.1)
P 		64
C 64.8
(3)
P 		29.7
(-3)
A 		53.8
(1.1)
P 		48.7
(0.2)
P 		35
avr 80.5
(3) 		29.4
(-3) 		37.1
(-2.1) 		42.5
(-1.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 48.4
(0.5)
P 		64.1
(3)
P 		29.3
(-2.5)
P 		25.8
(-3)
A 		56
(1.7)
P 		60.6
(2.5)
P 		38
B 83.3
(1.4)
P 		54.5
(-1.1)
P 		35.7
(-2.8)
P 		33.9
(-3)
P 		39.8
(-2.5)
P 		100.6
(3)
P 		67
C 73.7
(3)
P 		63.6
(1.6)
P 		38.1
(-1.9)
P 		29.8
(-3)
A 		36.6
(-2.1)
P 		64.7
(1.8)
P 		44
avr 68.5
(2.1) 		60.7
(1.1) 		34.4
(-2.4) 		29.8
(-3) 		44.1
(-1.1) 		75.3
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20487
Sequence Type Exemplar sequence
Representative Public ID C63302 NCBI
Target Description C63302 /REP_DB=TREMBL Accession /GB=C63302 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063793 NCBI Caenorhabditis elegans F33H1.4 (F33H1.4) mRNA, complete cds. 11/11 None
F33H1.4 ENSEMBL cdna:known chromosome:CEL140:II:10174792:10180037:1 gene:F33H1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10179591-10180024(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H1.4
Entrez Gene 174580 Entrez gene
SwissProt Q19991 EMBL-EBI
WormBase CE02206 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88699 Hypothetical protein F33H1.4 [Caenorhabditis elegans] ref|NP_496194.1| F33H1.4 [Caenorhabditis elegans] 0.0
blast CAE57885 Hypothetical protein CBG00931 [Caenorhabditis briggsae] 0.0
blast CAE57852 Hypothetical protein CBG00889 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:174067_AT
ttctaatcatcatttcttatcccctgggttatgatattttaatatctagttttttcattc
ttttactttgttccaaatttgaaattccttttatgttgacctacattctcccatcttttt
tattaccggtccagaaagtgttaatgacacacagctgtctacactatctggaacggtaat
atcgtgccaaagcgatcgttccgtgaacactgcaattccgtacagtcgggaccccttttg
caactgtacacagatcgatcgctttgtcgttaaaataacctagttaccaattcaataccc
catc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTAATCATCATTTCTTATCCCCT 665 691 40 Antisense
TTCATTCTTTTACTTTGTTCCAAAT 387 689 93 Antisense
GAAATTCCTTTTATGTTGACCTACA 649 361 120 Antisense
TACATTCTCCCATCTTTTTTATTAC 339 645 141 Antisense
AGCTGTCTACACTATCTGGAACGGT 561 79 192 Antisense
GTGCCAAAGCGATCGTTCCGTGAAC 63 479 223 Antisense
TTCCGTGAACACTGCAATTCCGTAC 480 697 238 Antisense
TGCAATTCCGTACAGTCGGGACCCC 661 575 250 Antisense
ACCCCTTTTGCAACTGTACACAGAT 145 91 270 Antisense
TACACAGATCGATCGCTTTGTCGTT 631 639 286 Antisense
CTAGTTACCAATTCAATACCCCATC 233 225 319 Antisense
Sequence Source Affymetrix Proprietary Database