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[174065_at]

Description C60626 /REP_DB=TREMBL Accession /GB=C60626 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209g8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 26      4grp_high_8_8 > 63      6grp_highest_nonorm > 10      6grp_total > 25      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2187
1 2 3 4 range
A 2315.5
(-0.1)
P 		2164.1
(-0.6)
P 		3345.6
(3)
P 		1379
(-3)
P 		1967
B 2676.3
(1.5)
P 		2229
(-0.3)
P 		3028.4
(3)
P 		1575.9
(-3)
P 		1453
C 2487.3
(-0.4)
P 		2391.3
(-0.7)
P 		3566
(3)
P 		1645.4
(-3)
P 		1921
avr 2493
(0.2) 		2261.5
(-0.5) 		3313.3
(3) 		1533.4
(-3) 		1780

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 976
1 2 3 4 5 6 range
A 1277.5
(-0.1)
P 		1636.7
(3)
P 		1374.2
(0.7)
P 		1162.5
(-1.1)
P 		944.7
(-3)
P 		984.4
(-2.7)
P 		692
B 1801.2
(3)
P 		1502.6
(0.7)
P 		1124.2
(-2.3)
P 		1304
(-0.9)
P 		1038.2
(-3)
P 		1250.2
(-1.3)
P 		763
C 1920.2
(3)
P 		1805
(2.2)
P 		1703.6
(1.5)
P 		1040.7
(-3)
P 		1719.7
(1.6)
P 		1063.9
(-2.8)
P 		880
avr 1666.3
(3) 		1648.1
(2.8) 		1400.7
(0.2) 		1169.1
(-2.3) 		1234.2
(-1.6) 		1099.5
(-3) 		567
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1041
1 2 3 4 range
A 843.1
(2.7)
P 		469.8
(-0.6)
P 		874.6
(3)
P 		201.9
(-3)
P 		673
B 853.4
(3)
P 		550.5
(-0.5)
P 		701.8
(1.2)
P 		335.8
(-3)
P 		518
C 823.4
(0.4)
P 		687.5
(-0.5)
P 		1242.9
(3)
P 		277.4
(-3)
P 		966
avr 840
(2.1) 		569.3
(-0.3) 		939.8
(3) 		271.7
(-3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 235.5
(-3)
P 		582.1
(3)
P 		299.3
(-1.9)
P 		294.8
(-2)
P 		285.1
(-2.1)
P 		239.7
(-2.9)
P 		347
B 626.7
(3)
P 		500.2
(0.9)
P 		273
(-3)
P 		345.4
(-1.8)
P 		421.8
(-0.5)
P 		466.2
(0.3)
P 		354
C 711.7
(3)
P 		550.8
(1.1)
P 		433.6
(-0.3)
P 		209.3
(-3)
P 		556.5
(1.1)
P 		356.2
(-1.2)
P 		502
avr 524.6
(2.5) 		544.4
(3) 		335.3
(-1.8) 		283.2
(-3) 		421.1
(0.2) 		354
(-1.4) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20857
Sequence Type Exemplar sequence
Representative Public ID C60626 NCBI
Target Description C60626 /REP_DB=TREMBL Accession /GB=C60626 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209g8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171849 NCBI Caenorhabditis elegans C17G10.9a (C17G10.9) mRNA, complete cds. 11/11 A 
C17G10.9a.1 ENSEMBL cdna:known chromosome:CEL140:II:5619559:5622454:-1 gene:C17G10.9 11/11 A 
C17G10.9a.2 ENSEMBL cdna:known chromosome:CEL140:II:5619559:5622452:-1 gene:C17G10.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170996 5/11 Cross Hyb Matching Probes A 
SNAP00000018058 5/11 Cross Hyb Matching Probes None
C17G10.9b 5/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173950 2 1 NM_171849 174065_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5619707-5619997(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68188 Hypothetical protein C17G10.9a [Caenorhabditis elegans] ref|NP_740995.1| C17G10.9a [Caenorhabditis elegans] 0.0
blast AAM54207 Hypothetical protein C17G10.9b [Caenorhabditis elegans] ref|NP_740994.1| C17G10.9b [Caenorhabditis elegans] 0.0
blast CAE62786 Hypothetical protein CBG06959 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174065_AT
tgctcgtcacgtcggtgaacatttcattcgacatattcagaagttgcaagaggttcagga
tgtgctcaaacgactcgatatccagaaaccatgatccttaaaaagtatttgagctaaacg
aaacatgactggttgatttccggttaatttcgtttagtttcacaccaactcccactcgtt
tgttaacattatatctcttgttgaaaattaaaaacatctctccgtttatttataccactt
tct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCGTCACGTCGGTGAACATTTC 46 561 27 Antisense
GGTGAACATTTCATTCGACATATTC 278 501 40 Antisense
CATTCGACATATTCAGAAGTTGCAA 281 217 51 Antisense
GAAGTTGCAAGAGGTTCAGGATGTG 54 337 66 Antisense
AAGAGGTTCAGGATGTGCTCAAACG 187 153 74 Antisense
TTGAGCTAAACGAAACATGACTGGT 246 705 135 Antisense
ATGACTGGTTGATTTCCGGTTAATT 91 41 151 Antisense
CAACTCCCACTCGTTTGTTAACATT 541 187 192 Antisense
GTTAACATTATATCTCTTGTTGAAA 513 445 208 Antisense
ACATCTCTCCGTTTATTTATACCAC 72 107 240 Antisense
TCTCCGTTTATTTATACCACTTTCT 464 609 245 Antisense
Sequence Source Affymetrix Proprietary Database