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[174064_s_at]

Description C42194 /REP_DB=TREMBL Accession /GB=C42194 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk290b4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 09      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 32      6grp_total > 19      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 1372.9
(3)
P 		1269.6
(1.2)
P 		1034.7
(-3)
P 		1281.3
(1.4)
P 		338
B 1403.3
(3)
P 		1125.4
(-2.2)
P 		1083.3
(-3)
P 		1202.8
(-0.8)
P 		320
C 1456.6
(3)
P 		1284.9
(0.5)
P 		1037.7
(-3)
P 		1164.9
(-1.2)
P 		419
avr 1410.9
(3) 		1226.6
(-0.1) 		1051.9
(-3) 		1216.3
(-0.3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1032
1 2 3 4 5 6 range
A 1006.8
(-1.5)
P 		1233
(1.2)
P 		1382.2
(3)
P 		1226.6
(1.1)
P 		978.1
(-1.9)
P 		887.1
(-3)
P 		495
B 1387.5
(3)
P 		1110.6
(0.2)
P 		1095.4
(0)
P 		1068.6
(-0.3)
P 		1203.7
(1.1)
P 		802.3
(-3)
P 		585
C 1650
(3)
P 		1063.2
(-0.4)
P 		1153.3
(0.1)
P 		922.3
(-1.2)
P 		1651.8
(3)
P 		619.5
(-3)
P 		1032
avr 1348.1
(3) 		1135.6
(0.8) 		1210.3
(1.6) 		1072.5
(0.1) 		1277.9
(2.3) 		769.6
(-3) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 499.9
(3)
P 		275.6
(-1.3)
P 		270.5
(-1.4)
P 		187.6
(-3)
P 		312
B 447.5
(3)
P 		278
(-2.2)
P 		251
(-3)
P 		256.3
(-2.8)
P 		197
C 482.2
(3)
P 		369.4
(0.6)
P 		361.7
(0.5)
P 		196.4
(-3)
P 		286
avr 476.5
(3) 		307.7
(-0.8) 		294.4
(-1.2) 		213.4
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 185.6
(-3)
P 		438.5
(3)
P 		301
(-0.3)
P 		311.1
(-0)
P 		295.1
(-0.4)
P 		216
(-2.3)
P 		253
B 482.8
(2.8)
P 		369.7
(-0.2)
P 		266
(-3)
P 		283
(-2.5)
P 		489
(3)
P 		299.2
(-2.1)
P 		223
C 611.6
(3)
P 		324.4
(-1)
P 		293.5
(-1.5)
P 		185.5
(-3)
P 		534.5
(1.9)
P 		207.4
(-2.7)
P 		426
avr 426.7
(2.6) 		377.5
(1.1) 		286.8
(-1.6) 		259.9
(-2.4) 		439.5
(3) 		240.9
(-3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174064_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20990
Sequence Type Exemplar sequence
Representative Public ID C42194 NCBI
Target Description C42194 /REP_DB=TREMBL Accession /GB=C42194 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk290b4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027682(11), NM_001027683(11), NM_001027684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027682 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) (pqn-83) mRNA, complete cds. 11/11 None
NM_001027683 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) (pqn-83) mRNA, complete cds. 11/11 None
NM_001027684 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) (pqn-83) mRNA, complete cds. 11/11 None
Y39E4B.3a ENSEMBL cdna:known chromosome:CEL140:III:13087007:13098971:-1 gene:Y39E4B.3 11/11 A 
Y39E4B.3b ENSEMBL cdna:known chromosome:CEL140:III:13087008:13098971:-1 gene:Y39E4B.3 11/11 A 
Y39E4B.3c.2 ENSEMBL cdna:known chromosome:CEL140:III:13090219:13098976:-1 gene:Y39E4B.3 11/11 None
Y39E4B.3c.1 ENSEMBL cdna:known chromosome:CEL140:III:13090219:13098971:-1 gene:Y39E4B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012007 8/11 Cross Hyb Matching Probes None
GENEFINDER00000012031 8/11 Cross Hyb Matching Probes None
SNAP00000012009 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012024 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13090281-13093476(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39E4B.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10817 Hypothetical protein Y39E4B.3b [Caenorhabditis elegans] ref|NP_001022854.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) [Caenorhabditis elegans] 6.0E-76
blast CAH10818 Hypothetical protein Y39E4B.3c [Caenorhabditis elegans] ref|NP_001022855.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) [Caenorhabditis elegans] 6.0E-74
blast CAB54432 Hypothetical protein Y39E4B.3a [Caenorhabditis elegans] ref|NP_001022853.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) [Caenorhabditis elegans] 2.0E-68
blast CAH10818 Hypothetical protein Y39E4B.3c [Caenorhabditis elegans] ref|NP_001022855.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) [Caenorhabditis elegans] 4.0E-68
blast CAH10817 Hypothetical protein Y39E4B.3b [Caenorhabditis elegans] ref|NP_001022854.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-83) [Caenorhabditis elegans] 4.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 1.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022853.1 1 291-313
Y39E4B.3a 1 291-313
Sequence
Target Sequence 
>C. ELEGANS:174064_S_AT
ctccagatggttcaacgacgatttctccatcatcaactactccaacaccggagcaggttc
ttcaaaatatccaataccccgacggatcgcgaccgaagaacattgtatgggcatgcaaag
ccggacgtgaagtgtgctgtggaaccgactgctgtccggctccagttcaaaaccaaaatt
ctgccggaggagccggtggaagtcacggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGATGGTTCAACGACGATTTC 324 235 28 Antisense
TGGTTCAACGACGATTTCTCCATCA 475 551 35 Antisense
TCAACGACGATTTCTCCATCATCAA 137 631 39 Antisense
GTATGGGCATGCAAAGCCGGACGTG 710 441 132 Antisense
GCATGCAAAGCCGGACGTGAAGTGT 84 307 138 Antisense
GCCGGACGTGAAGTGTGCTGTGGAA 692 283 147 Antisense
GGACGTGAAGTGTGCTGTGGAACCG 243 525 150 Antisense
GAAGTGTGCTGTGGAACCGACTGCT 413 335 156 Antisense
AACCAAAATTCTGCCGGAGGAGCCG 86 145 198 Antisense
AAAATTCTGCCGGAGGAGCCGGTGG 340 123 202 Antisense
GAGGAGCCGGTGGAAGTCACGGATC 201 405 214 Antisense
Sequence Source Affymetrix Proprietary Database